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Name : Lcho_2998 (Lcho_2998) Accession : YP_001792025.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Virulence Product : type I secretion system ATPase Function : - COG functional category : V : Defense mechanisms COG ID : COG2274 EC number : - Position : 3304005 - 3306266 bp Length : 2262 bp Strand : + Note : KEGG: xac:XAC2202 hemolysin secretion protein B; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase DNA sequence : ATGCAGCCCGCCCAGCGCCATCCCGATCCCGATCCCGCGCCCGTCGCGCCAAAACCCACGGTGGGCCACCGCGCCGATGC CAGCGGCCTGCCGGCCCTGTGCCTGCTCGCTCGCCTGCACCACCTGGGCGCCGACGCCGCCAGCCTGCGTCACCAGTTGG GCAAGTCACCGAACGAGGTATTCACCACCGACGACCTGCTGGTGGCGGCCCAGCACCTGGGCCTCAAAGCCAAGCGCCTG GCCAGCAGCGCCGAGCGCCTGCCGCTGGTGCCGCTGCCGGCGCTGGCGCGCCTGCGCATCGACACCGGTGACGGCTCAGC CGTCGAACGCTGGGTGCTGCTGGCCCAGTGCGACGGCCAGCGTGTGCTGTTCCAGGATGCCGCTGCGGCCGACGGCGGCC GCCCCACGATCGAGCCGCTGGCCACCTTCGCCGCGCAATGGAGCGGCGAACTGATCGTCGCCAGCAGCCGCGCCAGCGTC GCCGGTGATCTCGCCAGGTTCGACTTCAGCTGGTTCATCCCCAGCCTGGTCAAGCACCGCCGCCTGCTCGGCGAAGTGCT GCTGGTGTCGCTGTTCCTGCAGCTGTTTGCGCTGGTCTCGCCGCTGTTCTTCCAGGTCGTGATGGACAAGGTGCTGGTGC ACCGGGGGCTTTCCACGCTCAACGTGCTGATGGTCGGGCTGGTGGTCGTGGTGCTGTTCGAGAGCCTGCTCACGCTCTTG CGCAGCTACGTCTTCACCCACACCACCAGCCGCATCGACGTCGAGCTGGGCGCGCGGCTGTTCCGGCATCTGCTGGCGCT GCCCTTGTCTTACTTCCAGGCCCGCCGGGTCGGCGATTCGGTCGCGCGTGTCAGGGAGCTGGAAAACATCCGCAGCTTCC TGACCGGCAGCGCGCTGACGCTCGTGCTCGACCTGCTGTTCTCGGGGGTCTTCATCGCCGTGATGCTGCTCTACAGCGTG CCGCTGACGCTGGTCGTGCTGGCCAGCGTGCCGATCTACCTGGGCCTGAGCCTGAGCGTGGTGCCGCTGCTGCGCGCCCG ATTGAACGAGAAGTTCGCCCGCGGCGCCGAGAACCAGGCGCTGCTGGTCGAGACTCTCACCGGCATCCAGACCGTCAAGG CCAGCGCGCTCGAACCCGCCCTGGCGCGGCGCTGGGACGGCCAGCTCGCCGCCTACGTCAGCGCGAGCCTGCGCACCCAG ACCCTGGCCAACGCCGCGCACGAAGGCGTCAACCTCACCGCCAAGCTCGTCAACGTGGCCACGCTGTGGCTCGGCGCCCA GCTGGTGATGGACGGCGCGCTGACGGTGGGCATGTTCGTCGCGTTCAACATGTTCGCCGGCCGGGTGGCGCAGCCCATCA TGCGCCTGGCGCAGATGTGGACCGACTTCCAGCAGACCGGCATTGCGATGCAGCGCCTGGGCGACATCCTCGACACCCGC ACCGAGGTGCCACCGAGCAGCGCCGCGCAACTGCCCGCGCTGCAAGGCCGCATCACGCTCGACGGCGTGAGCTTCCGCTA CCGCCCCGACGCGCCGCTGGTACTGCAGGGCCTGAGCCTGGAGATCGCGCCCGGCGAGGTGATCGGCATCGTCGGGCGCT CCGGCTCGGGCAAGAGCACGCTGACCAAGCTGATCCAGCGCCTGCACGTGCCCGAACAGGGCCGCGTCAAGGTCGACGGC ATCGACATCGCGCTGATCGACGCCGCCCAGCTGCGCCGCCAGGTGGGGGTGGTGCTGCAGGAGAACTGGCTGTTCAACCG CAGTATCCGCGACAACATCGCCATCGCCGACCCCGGCGCGCCGCTCGAGGCGGTGCTGGCGGTGGCGCAGCTGGCCGGGG CGCACGAGTTCATCAGCCAGCTGCCCGAAGGCTACGACACGTTGGTGGGTGAACAAGGCGCCAGCCTGTCGGGCGGCCAA CGCCAGCGCATCGCCATCGCCCGCGCGCTGTTCGGCAACCCGCGCATCCTGATCTTCGACGAAGCCACCAGCGCGCTCGA CTACGAGAGCGAGGCGATCCTGCAGCGCCACATGGCGATGATCTGCCGCGGCCGCACCGTGATCATCATTGCGCACCGCC TGTCGAGCGTGCGCGGCGCGCACCGCATCATCGCGATGGACCAGGGCCGCATCGTCGAGGCCGGCAGCCATGAGGTGCTG CTGCGTACTGACGGGCTGTATGCGCAGCTGTGGCGGCTGCAGGCGGGCGGGCCCGCAACAGGCCCCGCCACTCCCGCAGG CCAACAGGAGCCACGGCCATGA Protein sequence : MQPAQRHPDPDPAPVAPKPTVGHRADASGLPALCLLARLHHLGADAASLRHQLGKSPNEVFTTDDLLVAAQHLGLKAKRL ASSAERLPLVPLPALARLRIDTGDGSAVERWVLLAQCDGQRVLFQDAAAADGGRPTIEPLATFAAQWSGELIVASSRASV AGDLARFDFSWFIPSLVKHRRLLGEVLLVSLFLQLFALVSPLFFQVVMDKVLVHRGLSTLNVLMVGLVVVVLFESLLTLL RSYVFTHTTSRIDVELGARLFRHLLALPLSYFQARRVGDSVARVRELENIRSFLTGSALTLVLDLLFSGVFIAVMLLYSV PLTLVVLASVPIYLGLSLSVVPLLRARLNEKFARGAENQALLVETLTGIQTVKASALEPALARRWDGQLAAYVSASLRTQ TLANAAHEGVNLTAKLVNVATLWLGAQLVMDGALTVGMFVAFNMFAGRVAQPIMRLAQMWTDFQQTGIAMQRLGDILDTR TEVPPSSAAQLPALQGRITLDGVSFRYRPDAPLVLQGLSLEIAPGEVIGIVGRSGSGKSTLTKLIQRLHVPEQGRVKVDG IDIALIDAAQLRRQVGVVLQENWLFNRSIRDNIAIADPGAPLEAVLAVAQLAGAHEFISQLPEGYDTLVGEQGASLSGGQ RQRIAIARALFGNPRILIFDEATSALDYESEAILQRHMAMICRGRTVIIIAHRLSSVRGAHRIIAMDQGRIVEAGSHEVL LRTDGLYAQLWRLQAGGPATGPATPAGQQEPRP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hlyB | NP_755448.1 | hemolysin B | Virulence | PAI I CFT073 | Protein | 5e-167 | 61 |
| hlyB | CAD33760.1 | hemolysin B | Virulence | PAI I 536 | Protein | 1e-166 | 61 |
| hlyB | CAD42038.1 | HlyB protein | Virulence | PAI II 536 | Protein | 1e-166 | 61 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lcho_2998 | YP_001792025.1 | type I secretion system ATPase | VFG0907 | Protein | 2e-167 | 61 |
| Lcho_2998 | YP_001792025.1 | type I secretion system ATPase | VFG1557 | Protein | 6e-167 | 61 |
| Lcho_2998 | YP_001792025.1 | type I secretion system ATPase | VFG1501 | Protein | 6e-167 | 61 |
| Lcho_2998 | YP_001792025.1 | type I secretion system ATPase | VFG1269 | Protein | 3e-177 | 60 |
| Lcho_2998 | YP_001792025.1 | type I secretion system ATPase | VFG0841 | Protein | 6e-165 | 54 |
