Gene Information

Name : Lcho_3208 (Lcho_3208)
Accession : YP_001792231.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Resistance
Product : ABC transporter-like protein
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG1126
EC number : -
Position : 3552861 - 3553646 bp
Length : 786 bp
Strand : -
Note : PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_3475 ABC transporter related

DNA sequence :
GTGAACGCTGATGTGAATGCCGTGAAAACCGCCGCCGACATGGCTGCGCAAGCCGCCCCGATCGTGCGCATCCAGGCCCT
GCGCAAGCGCTTCGGCACCAACGAGGTGCTCAAGGGCATCGACCTCGACGTCATGCCCGGCGAGGTGATCGCCATCATCG
GCAAGAGCGGCTCGGGCAAGAGCACGCTGCTGCGCTGCATCAACGGGCTGGAGGAGTTTCAGGAGGGCGCGCTCGCCGTC
GACGGCCAGGCGCTCAAGCACGGCGACGCCAAGGCGATGCGCGCGCTGCGTCAGCACGTGGGCATGATCTTCCAGAACTT
CAACCTGTTCCCGCACCTGACGGTCGGCCGCAACGTGATGCTGGCGCCCACGCTGGTGAAGCAGAGCGACAGCAGCACCG
CTACCGCGCAGGCCAGGGCGCTGCTCGAACGGGTCGGCCTGGCCGAGAAGTTCGACGCCTGGCCCGATCAGCTCTCGGGC
GGCCAGCAACAGCGCGTGGCGATCGCCCGGGCGCTTGCGATGCAGCCGAGCGTGATGCTGTGCGACGAGATCACCTCGGC
GCTCGACCCCGAGCTGGTCGGCGAGGTGCTGCGCGTGGTCGAGCGCCTGGCCGAGGAGGGCATGACGCTGCTGATGGTCA
CGCACGAGATGAACTTCGCGCGCAAGGTGGCCGATCGGGTGGTGTTCATGCATGCCGGGCGCATCCACGAGATGGGCCCG
CCCGAGCAGCTGTTCGGCGCGCCGCAGACGGCGGAGTTGCAGCAGTTCCTGTCGGCGCTGCATTAG

Protein sequence :
MNADVNAVKTAADMAAQAAPIVRIQALRKRFGTNEVLKGIDLDVMPGEVIAIIGKSGSGKSTLLRCINGLEEFQEGALAV
DGQALKHGDAKAMRALRQHVGMIFQNFNLFPHLTVGRNVMLAPTLVKQSDSSTATAQARALLERVGLAEKFDAWPDQLSG
GQQQRVAIARALAMQPSVMLCDEITSALDPELVGEVLRVVERLAEEGMTLLMVTHEMNFARKVADRVVFMHAGRIHEMGP
PEQLFGAPQTAELQQFLSALH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 8e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Lcho_3208 YP_001792231.1 ABC transporter-like protein NC_012469.1.7686878. Protein 6e-22 41