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Name : secD (Lcho_0344) Accession : YP_001789384.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 376828 - 378729 bp Length : 1902 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGTTATCCCTGGTGGAAGTACCTGATCCTCGCCATCGCGGTGCTGGTCGGGTCGCTTTACACCCTGCCCAATTT CTTCGGCGAAGCGCCGGCCGTGCAGGTCTCGAGCGGCAAGGCGACCGTGAAGGTCGATGCCTCGCTGGTGCCGCGCGTGC AGCAGGCGCTCGCCGGTGCCGGCCTGTCGCCCGACTTCGTGCAGCTCGAGGGCCTGTCCGTGCGCGCCCGCTTCGGCGAC ACCGACACCCAGCTCAAGGCGCGGGATGCGGTCGTCAAGGCGCTCAATCCGGATCCGTCCGACCCGAGCTACATCGTCGC GCTGAACCTGATCTCGCGTTCGCCGCAGTGGCTGACGGCGATGCGCGCGCTGCCGATGTACCTGGGCCTGGACCTGCGCG GCGGCGTGCACTTCCTGATGCAGGTCGACATGAAGGCGGCGCTGACCAAGAAGGCCGAGTCGCTGACCGGCGACCTGCGC GCGCTGCTGCGCGACAAGTCGATCCGCCATGCCGGCATCGTGCGCAACGGCGATGGCGTCGAGGTGCGCCTGCGCGACGC GCCAACCCAGGCCCGCGCGCTGGCGCTGCTGCGCGAGCAGCAGCCCGACCTGCTGTGGGTCGAGTCCACCGACGGCACCG AATTCAAGCTCGCCGGCACGCTCAAGCCCGAGGCCGCGCGCAAGGTCCAGGAACAGGCCGTCACGCAGAACATCAACACC CTGCACAACCGCATCAACGAGCTCGGCGTGGCCGAGCCGGTGATCCAGCAGCAGGGCCTCGACCGCGTGGTGGTGCAGCT GCCGGGCGTGCAGGACGTCGCCAAGGCCAAGGACATCATCGGCCGCACGGCCACGCTCGAGGTGCGCCTGGTCGACGACA GCACCGAGGCGCAGGCGGCGCTGTCGGGCGGTGGCCCGGTGCCGTTCGGCACCGAGCGCTACACCGAACGCGGTGCGCGC GCGATCATCGTCAAGCGTCAGGTCATCCTGACCGGCGAGAACCTGACCGACGCGCAGGCCGGCTTCGACGAGAACCAGCA GCCCGCCGTGCACCTCACGCTCGATGCCCGCGGCGCGCGCATCTTCCGCGACGTCACGCGCGAGAACATCAACAAGCGCA TGGCCATTCTCCTGTTCGAGAAGGGCAAGGGCGAGGTCGTCACCGCGCCGGTGATCCGCAGTGAAATCGGCGGCGGGCGG GTGCAGATCTCGGGTTCGATGTCGCCGGTCGAGTCGGCCGACACCGCGCTGCTGCTGCGCGCGGGCTCGCTGGCCGCGCC GATGGAGATCATCGAGGAGCGCCTGATCGGCCCCAGCCTGGGCGCCGAGAACATCGCCAAGGGCTTCGACAGCGTGCTGT ACGGCTTTGTCGCGATCGCGATCTTCATGTGCTGCTACTACCTGCTGTTCGGCGTCTTCTCGACCCTGTCGCTGGGCGTG AACCTGCTGCTGCTGGTGGCGGTGCTGTCGATGATGCAGGCCACGCTGACGCTGCCGGGCATCGCCGCCATCGCGCTGGT GCTGGGCATGGCGATCGACGCCAACGTGCTGATCAACGAGCGCGTGCGCGAGGAACTGCGTGCCGGCGCCTCGCCGCAGA TGGCGATCCACACCGGCTACGAACGCGCCTTCGCGACCATCCTCGACTCGAACGTCACCACGCTGATCGCCGGCCTGGCG CTGCTCGCCTTCGGCTCCGGCCCGGTGCGCGGCTTCGCGGTGGTGCACTGCCTGGGCATCCTGACCTCGATGTTCTCGGC CGTGATGTTCTCGCGCGGCCTGGTGAACCTCTGGTACGGGCGCAAGAAGAAGCTGCAGAAGGTCTCGATCGGCCAGGTGT GGCGACCGGCCGGTGCGGTCGCCGAACCCGGCTCCGGCGTCAGCGTCGGCAAGCAGGCCTGA Protein sequence : MNRYPWWKYLILAIAVLVGSLYTLPNFFGEAPAVQVSSGKATVKVDASLVPRVQQALAGAGLSPDFVQLEGLSVRARFGD TDTQLKARDAVVKALNPDPSDPSYIVALNLISRSPQWLTAMRALPMYLGLDLRGGVHFLMQVDMKAALTKKAESLTGDLR ALLRDKSIRHAGIVRNGDGVEVRLRDAPTQARALALLREQQPDLLWVESTDGTEFKLAGTLKPEAARKVQEQAVTQNINT LHNRINELGVAEPVIQQQGLDRVVVQLPGVQDVAKAKDIIGRTATLEVRLVDDSTEAQAALSGGGPVPFGTERYTERGAR AIIVKRQVILTGENLTDAQAGFDENQQPAVHLTLDARGARIFRDVTRENINKRMAILLFEKGKGEVVTAPVIRSEIGGGR VQISGSMSPVESADTALLLRAGSLAAPMEIIEERLIGPSLGAENIAKGFDSVLYGFVAIAIFMCCYYLLFGVFSTLSLGV NLLLLVAVLSMMQATLTLPGIAAIALVLGMAIDANVLINERVREELRAGASPQMAIHTGYERAFATILDSNVTTLIAGLA LLAFGSGPVRGFAVVHCLGILTSMFSAVMFSRGLVNLWYGRKKKLQKVSIGQVWRPAGAVAEPGSGVSVGKQA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 2e-92 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-92 | 41 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-92 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-92 | 41 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 9e-93 | 41 |
