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Name : Lcho_4090 (Lcho_4090) Accession : YP_001793107.1 Strain : Leptothrix cholodnii SP-6 Genome accession: NC_010524 Putative virulence/resistance : Virulence Product : EvpB family type VI secretion protein Function : - COG functional category : S : Function unknown COG ID : COG3517 EC number : - Position : 4585545 - 4587041 bp Length : 1497 bp Strand : - Note : TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: azo:azo3896 putative cytoplasmic protein, SciI DNA sequence : ATGGCCACTGAAACCTCCCCCGGCGGTGCCGCGCTGCAAGGTGTCGCCTTCGAAGGCGGCGACTTCGCCGCGCTGCTCGA CCGCGAATTCAAGCCCAAGACCGACGAGGCCAAGAGCGCCGTCGAACAGGCGGTGATGACGCTGGCGCAGCAGGCGCTGG CGCAGACCACGCTGATCGGCAGCGACGTGATCGGCTCGATCGAGGCGCTGATCGCCGCACTCGACGCCAAGCTCAGCGCG CAGGTCAACGCGATCCTGCACCACGACGACTTCCAGAAGCTCGAGAGCGCCTGGCGCGGCCTGCACCACCTCGTCAACAA CACCGAGACCGACGAGATGCTGATGATCCGGGTGATGAACATCTCGAAGAACGAGCTGGGCAAGACCCTCAAGCGCTACA AGGGCACGGCCTGGGACCAGAGCCCCATCTTCAAGAAGATCTACGAAGAGGAATACGGCCAGTTCGGCGGCGCGCCGTAT GGCTGCCTGGTGGGCGACTACTACTTCGACCAGAGCGCGCCCGATGTCGAGCTGCTGGGCGAGATCAGCAAGATCTCGGC CTCGGCCCACGCCCCGTTCATCGCCGCCGCCAACCCCGCGCTGATGCAGATGGGCTCGTGGCAGGAACTGGCCAATCCGC GCGACCTGACCAAGATCTTCACCACACCCGAATACGCCGCCTGGCGCTCGTTGCGCGAGTCCGACGACGCACGCTACATC GGCCTGGCGATGCCGCGTTTCCTGGCCCGCGCGCCGTATGGCGCCAAGACCAATCCGGTCGAGGAGTTCGACTTCGAGGA AGACACCGCCAACGCCGACCACAGCAAGTACACCTGGGCCAATTCGGCCTACGCGATGGCGGTCAACATCAACCGCGCGT TCAAGGAATACGGCTGGTGCTCGCGCATCCGCGGCATCGAGTCGGGTGGCGCGGTCGAGGGCCTGCCCACGCACACCTTC CCGACCGACGACGGCGGCGTCGACATGAAGTGCCCGACCGAGATCGCCATCAGCGACCGCCGCGAGGCCGAGCTGGCCAA GAACGGCTTCATGCCGCTGGTGCACAAGAAGAACTCGGACCTGGCCGCCTTCATCGGCGCGCAGTCGCTGCAGAAGCCGG CCGAATACGACGACCCCGACGCCACCGCCAATGCCAACCTGGCCGCGCGCCTGCCGTATCTGTTTGCCTGCAGCCGCTTT GCGCACTACCTGAAATGCATCGTGCGCGACAAGATCGGCTCGTTCAAGGAACGCGACGAGATCCAGCGCTGGCTGCAGGA CTGGATCATGAACTACGTCGACGGCGACCCGGCCCATTCGTCCGAAGAGACCAAGTCGCGCCGCCCGTTGGCGGCCGCCG AGGTGGTGGTGGCCGAGGACGAGAGCAACCCCGGCTACTACACCTCGAAGATCTTCCTGCGCCCGCACTACCAGCTCGAA GGGCTGACGGTGTCGCTGCGGCTGGTGTCCAAGCTGCCGTCGCAGAAATCGGCCTGA Protein sequence : MATETSPGGAALQGVAFEGGDFAALLDREFKPKTDEAKSAVEQAVMTLAQQALAQTTLIGSDVIGSIEALIAALDAKLSA QVNAILHHDDFQKLESAWRGLHHLVNNTETDEMLMIRVMNISKNELGKTLKRYKGTAWDQSPIFKKIYEEEYGQFGGAPY GCLVGDYYFDQSAPDVELLGEISKISASAHAPFIAAANPALMQMGSWQELANPRDLTKIFTTPEYAAWRSLRESDDARYI GLAMPRFLARAPYGAKTNPVEEFDFEEDTANADHSKYTWANSAYAMAVNINRAFKEYGWCSRIRGIESGGAVEGLPTHTF PTDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHKKNSDLAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFACSRF AHYLKCIVRDKIGSFKERDEIQRWLQDWIMNYVDGDPAHSSEETKSRRPLAAAEVVVAEDESNPGYYTSKIFLRPHYQLE GLTVSLRLVSKLPSQKSA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec18 | YP_851426.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 4e-79 | 41 |
| aec18 | AAQ96712.1 | Aec18 | Not tested | AGI-1 | Protein | 3e-79 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lcho_4090 | YP_001793107.1 | EvpB family type VI secretion protein | VFG2070 | Protein | 0.0 | 82 |
| Lcho_4090 | YP_001793107.1 | EvpB family type VI secretion protein | VFG2093 | Protein | 5e-83 | 43 |
| Lcho_4090 | YP_001793107.1 | EvpB family type VI secretion protein | VFG2475 | Protein | 5e-80 | 43 |
