Gene Information

Name : Lcho_0824 (Lcho_0824)
Accession : YP_001789861.1
Strain : Leptothrix cholodnii SP-6
Genome accession: NC_010524
Putative virulence/resistance : Unknown
Product : short-chain dehydrogenase/reductase SDR
Function : -
COG functional category : I : Lipid transport and metabolism
COG ID : COG1028
EC number : -
Position : 888058 - 888828 bp
Length : 771 bp
Strand : +
Note : PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pde:Pden_0196 short-chain dehydrogenase/reductase SDR

DNA sequence : 
ATGCTATTGAAGGACAAGGTGTGCGTGATTGCAGGTGCAGCCTCGCTGCGCAGCATCGGCTACGCCACGGCTGAACTGTT
TGTCGAACACGGTGCGAAGGTCGTGGTCACCGATCTCATGATGGACGAGCAGGTGCTCGCCGGCATCCGGTCGTCGATCG
AGAGCCAGCTCAAGCGCCCTGTGGAGATCCACGGGTTGCGCTGTGACGTCAGCAAGGCCGATGACTGCGATCAACTGGTC
CGCCAGGTGCTCGATCTGCACGGCACCATCGACTGCCTCGTCAACTCGGCAGGCATCGTCAAGTCGACCCCGCTGCTGGA
CATCGGCGCCCAGGAGCTGGACCTGATGTTCGACGTCAACCTCAAGGGCGCCTTCTTCCTGTGCCAGAGCGTGCTGCGGG
TGTTCGTCGAACGCCGCGCGGGCACCATCGTCAACGTCGCATCGCTCGCGGCGCAGCGCGGTGGCGGACTTGTCGGCGGC
CCTCACTACGCGGCATCCAAGGGCGGCATGCTGAGCCTGACGAGAAGCATCGCGCGCGAGTTCGGCCCTATGGGCATTCG
CGCCAATGCCATCTGCCCCGCGATGATCGACACGCCCATGCTCGACGGCCTGCCGGCGGATCGGCTGAGCGGCATCATCG
ACGCGATCCCCCTGAAGCGCACCGGCACACGGCGGGAAGCGGCCGGCGCCTGTCTCTTCCTGGCCTGCGAGCTGTCCGGC
TTCGTCACCGGTGCCACCCTCGACGTCAATGGCGGTACCCACATCCATTGA

Protein sequence : 
MLLKDKVCVIAGAASLRSIGYATAELFVEHGAKVVVTDLMMDEQVLAGIRSSIESQLKRPVEIHGLRCDVSKADDCDQLV
RQVLDLHGTIDCLVNSAGIVKSTPLLDIGAQELDLMFDVNLKGAFFLCQSVLRVFVERRAGTIVNVASLAAQRGGGLVGG
PHYAASKGGMLSLTRSIAREFGPMGIRANAICPAMIDTPMLDGLPADRLSGIIDAIPLKRTGTRREAAGACLFLACELSG
FVTGATLDVNGGTHIH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAT96098.1 putative short-chain type regulator dehydrogenase Not tested T-PAI Protein 3e-44 45
unnamed AAT96054.1 putative short-chain type regulator Not tested T-PAI Protein 2e-44 45
unnamed AAT96175.1 putative short-chain type regulator Not tested T-PAI Protein 5e-44 45
unnamed AAT96227.1 putative short-chain type regulator Not tested T-PAI Protein 4e-44 44
unnamed AAT96115.1 putative short-chain type regulator Not tested T-PAI Protein 4e-44 44