Gene Information

Name : lolD (YPTS_2525)
Accession : YP_001872943.1
Strain : Yersinia pseudotuberculosis PB1/+
Genome accession: NC_010634
Putative virulence/resistance : Resistance
Product : lipoprotein transporter ATP-binding subunit
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2802263 - 2802967 bp
Length : 705 bp
Strand : -
Note : outer membrane specific; part of transporter complex lolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone

DNA sequence : 
ATGAGTAATCATCCTTTATTACAATGTATAAACCTGTGCAAGCGTTATCAGGAAGGCCAACTGCATACTGATGTCCTGCG
CAATGTCTCTTTCGCTATCGAGCCTGGTGAACTGATGGCGATTGTCGGCAGTTCAGGTTCAGGTAAAAGCACGCTGTTGC
ATTTGCTGGGGGGGCTGGATTCACCCACCTCTGGTGAGGTTATTTATCAGGGGCGTTCGCTTAACCAACTCTCTTCTACC
GCGAAAGCTGAATTGCGTAATCGGGAGTTAGGTTTTATCTATCAATTTCATCATTTGTTGCCCGATTTTACCGCGTTAGA
AAATGTCGCCATGCCATTACTCATCGGCGGCAGTAAACCCGCTGAAGCGCAAGAGAAAGCCCATGAGATGCTGGCGGCGG
TGGGGTTGGCGAAGCGCAGTAAACATCGTCCATCGGAGTTATCAGGGGGAGAGCGCCAACGGGTCGCTATCGCCCGTTCT
TTGGTAAATAACCCATCGCTGGTATTGGCAGATGAACCTACCGGTAATCTGGACCAACGCAATGCCGACAGTATTTTTAA
TCTGTTAGGTGAATTGAATGTTCGTCAGGGGACCGCGTTTCTGGTGGTGACTCACGATTTACAATTAGCGAAACGGATGA
GCCGTCAACTTGAAATGCGAGATGGTCAGCTACAACACCATTTGACGCTGGTGGGGGCCGAGTGA

Protein sequence : 
MSNHPLLQCINLCKRYQEGQLHTDVLRNVSFAIEPGELMAIVGSSGSGKSTLLHLLGGLDSPTSGEVIYQGRSLNQLSST
AKAELRNRELGFIYQFHHLLPDFTALENVAMPLLIGGSKPAEAQEKAHEMLAAVGLAKRSKHRPSELSGGERQRVAIARS
LVNNPSLVLADEPTGNLDQRNADSIFNLLGELNVRQGTAFLVVTHDLQLAKRMSRQLEMRDGQLQHHLTLVGAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-28 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_001872943.1 lipoprotein transporter ATP-binding subunit NC_008702.1.4606598. Protein 5e-39 48
lolD YP_001872943.1 lipoprotein transporter ATP-binding subunit NC_012469.1.7686878. Protein 1e-40 46