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Name : secD (YPTS_0971) Accession : YP_001871409.1 Strain : Yersinia pseudotuberculosis PB1/+ Genome accession: NC_010634 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1105481 - 1107295 bp Length : 1815 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTGATCGTTGTGATCTTCGTCGGTCTGCTATATGCGCTTCCCAACCTTTATGGTGAGGATCCGGCTGTTCAAATCAC TGGTGCGCGAGGAATCGCCGCCAGTGAGACAACGCTGGTCCAAGTCCGTGACGTTTTAGAAAAAGACAACATAGCGAGCA AGTCTATTGCGCTGGAAAACGGTGCAATCCTGGCTCGCTTTAGAGATCCTGATGTCCAGCTACGTGCTCGCGAAGCACTG GTGGAGGCGTTGGGTGATAAATATGTTATCGCGCTGAACCTGGCTCCGGCAACACCTTCCTGGCTTGCCAAATTGGGTGC AGAACCCATGAAATTAGGTCTTGACCTGCGAGGTGGTGTTCATTTCCTGATGGAAGTGGATATGGATACCGCGCTGGGCA AACTGCAAGAGCAAACGATGGATACCTTACGCACTGATTTGCGTGAGAAAAATATCCCGTATGCCACAGTACGTAAGCTC GATAACTATGGTGTTGAAGTGCGTTTTCGCGATGATAAAGCGCGCAATGATGCTATCAGCTACCTCTCTTCGCGCCATCG TGATTTGGTGTTCAGCTCCAATGGCAGCAACACGCTAAAAGCGGTGATGAGTGATGAGCGTTTGCGGGAAGCTCGGGAAT ATGCGGTTCAACAAAATATTACAATTCTGCGTAACCGAGTTAACCAGCTAGGTGTTGCAGAGCCGTTAGTCCAACGGCAG GGTTCTGACCGTATTGTTGTTGAACTACCGGGTATTCAAGACACCGCGCGTGCTAAAGAGATTCTGGGTGCGACTGCAAC GTTGGAATTCCGTTTAGTCAACACTAACGTTGATGCTTCTGTCGCAGCTTCTGGCCGTGTACCTGGCGATTCGGAAGTGA AAAATACCCGTGAAGGCCGCCCGGTTGTCTTGTACAAACGAGTGATCTTGACCGGTGACCATATTACTGATTCAACCTCC AGTACCGACGAGTATAACCAGGCTCAGGTTAATATCTCGCTCGATAGTGCAGGGGGGGCGACGATGTCTAATTTTACTAA AGACAATATCGGCAAGCCGATGGCGACTTTATTCGTAGAATATAAAGACAGCGGTAAAAAAGATGCGAATGGCCGGTCTA TTCTGGTTAAACAAGAAGAAGTTATCAATGTGGCGACCATCCAGTCGCGTTTAGGTAACAGTTTCCGCATTACCGGCATT GATAACCCAGCTGAAGCGCGGCAACTTTCCCTGTTACTGCGTGCTGGTGCGTTGATTGCACCTATCCAGATTGTGGAAGA GCGTACTATTGGGCCAACGTTGGGTTCCCAGAATATTGCGCAAGGCTTAGAAGCCTGCTTATGGGGTCTGGCTGTATCGA TCCTGTTTATGGTGGTTTACTACCGTAAGTTTGGTGTGATTGCCAGTACTGCACTGATGGCCAACCTGGTGTTAATCGTC GGCGTGATGTCCTTATTACCGGGGGCGACATTAACCATGCCGGGTATTGCCGGGATTGTATTGACGCTAGCGGTAGCAGT AGATGCTAACGTACTGATTAACGAGCGAATAAAAGAAGAGTATAGAAACGGGCGGACGATCCAGCAAGCGATTCATGAAG GGTACAAGGGTGCCTTCTCAAGTATCGTCGATGCGAACATAACGACGCTTATCACAGCCATTATTCTTTATGCTGTGGGT ACTGGTTCGATTAAAGGCTTTGCTATTACAACGGCAATTGGTGTTGTAACGTCAATGTTCACCGCAATAGTCGGTACTCG TGCCATCGTCAACCTGCTTTACGGCGGCAAGCGCATTAACAAGCTGTCTATTTGA Protein sequence : MLIVVIFVGLLYALPNLYGEDPAVQITGARGIAASETTLVQVRDVLEKDNIASKSIALENGAILARFRDPDVQLRAREAL VEALGDKYVIALNLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNIPYATVRKL DNYGVEVRFRDDKARNDAISYLSSRHRDLVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQ GSDRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTS STDEYNQAQVNISLDSAGGATMSNFTKDNIGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVATIQSRLGNSFRITGI DNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIV GVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANITTLITAIILYAVG TGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-115 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-115 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-115 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-115 | 48 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-115 | 47 |
