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Name : secD (BAV0842) Accession : YP_785371.1 Strain : Bordetella avium 197N Genome accession: NC_010645 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 886881 - 888761 bp Length : 1881 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAACCGCTATCCCCTTTGGAAGTACATCACGGTTTTGGTTGCGGTCGTCATCGGCCTGCTCTATACCCTGCCCAATTT TTACGGCGAATCCCCCGCCGTGCAGATTTCCAGCGCCAAGGCCACTATCAAGGTCGAGCCGTCGCTGTTGCCCCGTGTTG AACAGATTCTGGCCGACGCCAAGCTATCGGCCACCAGCGTCTACTATGAACAAAACGGCACGCTGGGCACGATCCGGGCG CGCTTTCCGTCCACCGACATCCAGTTGCAGGCCCGGGACCTGCTGGATCGCAGCCTGAATACGGTTGCCGGTGATCCGCA TTACACCGTGGCCCTGAACCTGCTGCCCGCTTCGCCGCCCTGGATGCGCTCGCTGGGCTGGTTCGAACCCCGGCCCATGT ATCTCGGTCTCGACCTGCGCGGCGGTGTGCATTTCCTGCTGCAAGTCGATATGCAAGGCGCCCTGACGGCACGCTATGAC TCGCTGGCCGCCGATGCCCGCTCCATCCTGCGTGACCAGAAAATCGACGCCGTCAACGTCGAACGCAGCGGCCAAGCCAT CGTCGCCACCTTCTCCAGCCCCGAACTGCGCGACCGCGCCCGCGAAGCCCTGCGCAGCCGCATGACCGATCTGCAATTCA TCGATCGCAACGAGGACGGCCGTTTCGTGCTCGATGGCGCCCTCAGCCCGCAAGCCATCGCGCGCGTGCAGGAAACCGCG CTCAAGCAGAACATCAACACCCTGCACAACCGGATCAACGAGCTTGGCGTGGCCGAACCCGTGATTCAGCAACAAGGCGC TGACCGCATCGTCGTTCAACTGCCCGGCGTGCAGGACGTGGCCAAGGCCAAAGAACTGCTGGGCCGCACCGCCACCCTGG AGCTGCGCATGGTGGACGATTCGCCCGCCGCGCAAGCCGCCCTCGCCAACGGCACCGTGCCCTTCGGCCTGGAGCGCTAC TCCGACCGCGACGGCCGCCCGATTCTCGTGCGCCGCCAGGTCATCCTGACGGGCGAAAATCTCCAGGACGCTCAGCCCGG CCGCGACCACCAGACCCAGCAGCCCTCGGTCAACCTGACCCTGGACTCCAAGGGCGCGCGCATCTTCCGCGATGTCACGC GTGACAACGTGGGCAAGCGCATCGCCATTCTGCTGTTCGAAAACGGCAAGGGCGAAGTGGTGACAGCGCCGGTCATCCGT AGCGAAATCGGCGGCGGCCAGGTGCAGATCTCGGGCAGCATGTCTGCGGAAGAAGCGGCCGACACCGCGCTGCTGCTGCG CGCTGGCGCGCTGGCGGCGCCGATGTCCATCATCGAAGAACGCACCATCGGTCCGAGCCTGGGCGCGGACAATATCGCCA AGGGCTTTTATTCGACGCTCTACGGCTTTATTGCCATCGCGGTCTTCATCATCGTGTACTACCACCTGTTTGGGGTGTTC TCCACGATCGGCCTGACCTTCAACGTCCTCTTGTTGCTGGCCTTGCTGTCCATGCTGCAGGCCACCCTGACCCTGCCCGG CATCGCGGCTATCGCGCTCACGCTGGGCATGGCCATCGACTCGAACGTGCTGATCAATGAGCGTATCCGCGAAGAGCTCA GAGCAGGCGCCTCTCCGCAACAAGCCATCTATCATGGCTTCGAGCGTGCCTGGGGCACCATTCTGGACTCCAACCTGACC ACACTCATCGTCGGCCTGGCGCTGCTGGCCTTCGGGTCTGGCCCCATCCGCGGCTTCGCGGTTGTGCACTGCCTGGGCAT CCTGACCTCGATGTTCTCCTCCGTGGTGGGTGTGCGCGCCCTGGCCAACCTCTGGTATGGCGGCCGCAAAAAGCTCGCCA AGATTTCCATCGGCACGGTCTGGAAACCCGGAACCAAGTGA Protein sequence : MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQISSAKATIKVEPSLLPRVEQILADAKLSATSVYYEQNGTLGTIRA RFPSTDIQLQARDLLDRSLNTVAGDPHYTVALNLLPASPPWMRSLGWFEPRPMYLGLDLRGGVHFLLQVDMQGALTARYD SLAADARSILRDQKIDAVNVERSGQAIVATFSSPELRDRAREALRSRMTDLQFIDRNEDGRFVLDGALSPQAIARVQETA LKQNINTLHNRINELGVAEPVIQQQGADRIVVQLPGVQDVAKAKELLGRTATLELRMVDDSPAAQAALANGTVPFGLERY SDRDGRPILVRRQVILTGENLQDAQPGRDHQTQQPSVNLTLDSKGARIFRDVTRDNVGKRIAILLFENGKGEVVTAPVIR SEIGGGQVQISGSMSAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAIAVFIIVYYHLFGVF STIGLTFNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLINERIREELRAGASPQQAIYHGFERAWGTILDSNLT TLIVGLALLAFGSGPIRGFAVVHCLGILTSMFSSVVGVRALANLWYGGRKKLAKISIGTVWKPGTK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 5e-95 | 43 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 4e-95 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 4e-95 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 4e-95 | 43 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-95 | 43 |
