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Name : secD (Rpic_2959) Accession : YP_001900514.1 Strain : Genome accession: NC_010682 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3081667 - 3083556 bp Length : 1890 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAATCGCTATCCGCTCTGGAAATACCTTGTGATCCTGGTGGCGCTTGCCATTGGGTTCCTCTATACGCTGCCGAACTT CTTCGGTGAGGCGCCTGCTGTGCAGGTGTCTTCGGGCAAGGCCACCGTCAAGGTCGACCTGAACGTGCAAAAGCAGGTCG AGAGCCTGCTGGCTGCGGCCAGCATTCAGCCCGACGGCGTGTTCTTCGACAACAACGGCACCTCCGCCAGCGTGCGCGTG CGTTTTGCCGACACCGACACGCAGCTCAAGGCCAAGGACATCCTGGCCCGCGGCCTGAACACCGATCAAGCCGATCCGAC CTACATCGTGGCGCTGAACCTGCTGCCCGGTTCGCCGCGCTGGTTGAGCGGGGCACCGTTCTTTGCCAAGCCCATGTTCC TGGGCCTCGATTTGCGCGGTGGCGTGCACTTCCTGCTGCAGGTCGACATGAACGGCGCCGTGACGAAGAAGCTCGACTCG CTGGCCGGCGACATCCGCACGCAACTGCGTGACAAGGGCATTCGACACAGCGGCATCGACCGCAACGGCAACACCATCAC GATCAAGTTCAGCACCCCGGACGACGCCGACCGCGCCCGCACGCTGCTGGCCGATTCGACCCGCGAACTGGCCTACACCG TGGACAAGAGCGCCGACGGCGCCACGCTCACCGGCACCTTCACCGCCGCTGCGATGAAGGAAGTGCAGGACAACGCAGTC AAGCAGAACATCGTCACGCTGCATAACCGAGTGAACGAACTCGGCGTGGCCGAGCCGGTGATCCAACAGCAGGGCCCGGA CCGCATCGTTGTGCAATTGCCCGGCGTGCAGGACACCGCCAAGGCCAAGGACATCATCGGCCGCACCGCTACGCTGGAAG CGCGCCTGGCCGATCCGAACGCGCCGCTCGCGCCCCGCCCCGGCGACCCGGTACCGCTGGGCGACGAGCTGTTCACGCAA GGGCGCAGCGCTCCCGTCCTGCTGCAGAAGCAGGTGATCTTCACGGGCGATCGCATCACCAGCGCCTCGGCGGGCTTCGA CCAAAACCACAATTCGTCGGTCGACATCACGCTCGACGGCCAGGGCGGCCGCATGCTGCGCGATGTCTCGCGTGACAACA TCGGCAAGCGCATGGGTATCGTGCTCTTTGAAAAGGGCAAGGGCGAAGTGCTGACGGTGGCGACCATCCAGTCCGAACTG GGCTCGCGCTTCCAGATCACCGGCATGGGCTCGACCGAGGCGGCTTCCGACCTGGCGCTGCTGCTGCGTGCAGGCTCGCT GGCCGCGCCAATGGAAATCATCGAAGAACGCACCATCGGCCCATCGCTGGGTGCCGATAACATCAAGAAAGGCTTCGATT CGGCGCTGTACGGCTTCCTCGCCATCTCGGTGTTCATGGTGCTGTACTACATGCTGTTCGGCGCGTTCTCGGTGGCGGCC CTCGGCGTCAACGTGTTCCTGCTGATCGCACTGCTCTCCATGCTGCAGGCCACGCTCACGTTGCCGGGTATCGCGGCCAT CGCACTGGCGCTCGGTATGGCCATTGACGCGAACGTGCTGATCAACGAGCGCGTGCGTGAAGAGCTGCGCAGCGGCGCGT CGGCACAGATGGCCATCGCCGCCGGCTTTGACCGTGCCTGGGCGACCATCCTCGATTCGAACGTGACGACGCTCATCGCC GGTCTGGCGCTGATCGCCTTCGGTTCGGGCCCGGTACGCGGCTTCGCGATCGTGCACTGCCTGGGGATCGGCACGTCCAT GTTCTCGGCGGTGTTCTTCAACCGCGGTCTCGTGAACCTCTGGTACGGCCGCAAGAAGAAGCTCCAGAGCGTCGCCATCG GGCAGGTGTGGAAGCCGGGCAATACGAACGCGGAATCGCCCGCCAAGTAA Protein sequence : MNRYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVKVDLNVQKQVESLLAAASIQPDGVFFDNNGTSASVRV RFADTDTQLKAKDILARGLNTDQADPTYIVALNLLPGSPRWLSGAPFFAKPMFLGLDLRGGVHFLLQVDMNGAVTKKLDS LAGDIRTQLRDKGIRHSGIDRNGNTITIKFSTPDDADRARTLLADSTRELAYTVDKSADGATLTGTFTAAAMKEVQDNAV KQNIVTLHNRVNELGVAEPVIQQQGPDRIVVQLPGVQDTAKAKDIIGRTATLEARLADPNAPLAPRPGDPVPLGDELFTQ GRSAPVLLQKQVIFTGDRITSASAGFDQNHNSSVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLTVATIQSEL GSRFQITGMGSTEAASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGFDSALYGFLAISVFMVLYYMLFGAFSVAA LGVNVFLLIALLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRSGASAQMAIAAGFDRAWATILDSNVTTLIA GLALIAFGSGPVRGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKKKLQSVAIGQVWKPGNTNAESPAK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-94 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-94 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-94 | 43 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 3e-94 | 43 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-94 | 43 |
