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Name : secD (xccb100_1796) Accession : YP_001903202.1 Strain : Xanthomonas campestris B100 Genome accession: NC_010688 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2088193 - 2090061 bp Length : 1869 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGGTGCCGCGCGGGACTGTCGCAATGCTCGAATTTCCTCGCTGGAAGTATTTCCTGATCCTGGTGGTGCTGGCGGTCAG CGCGTTGTATGCGCTGCCCAACGTCTACCAGAAAGACCCGTCCGTGCAGATCACCGCCAGCCGCGGTGCGCAGCTGGACG ACGCGTTGCGCAGCCGGATCGACGCCGACCTCAAGAGCGCCGGCATCACGCCCAAGGCGGTGACCCGGGAAGGCGACAGC CTGATGGTGCGCCTGCCCACCCTGCAGGCGCAGACCCGTGCCAACGACGTGTTGCGCCAGCAGCTGGGCGAGAACTACAC GGTGGCGCTGAACCTGGCATCCACGGTGCCGGACTGGCTCGCCAAGCTGGGCGGCCGGCCGATGGTGCTGGGTCTGGACC TGGTCGGCGGCGTGCACTTCGCCATGCAGGTCGATCAGAAAGCCGCGCTGGAAAAGCGCCTGGAGGGCTTTGCCGAGGAC ATCCGCACCACGCTGCGCGATGGCCGCATTGCGTATCGCTCGGTGGAGCGTCGTGGCGACAACAGCATCCAGGTCTCGTT GGGCGAGGGCGCCAGCGCCGATGCCGCGCGGACCGCGCTGGCCAAGTCGCAGCCAACGCTGACCTACGACGTCAGCGGCC AGACCATCTCGGTGAAGGTGCCGGAGGCCGAACTCAAGCAGATCGCCAGCGGCGCGATCGAGCAGAACCTCACCACCTTG CGTAACCGGGTCAATGCACTGGGCGTGTCCGAGCCGACCATCCAGCGCCAGGGCGAAGACCGCATCGTGGTCGAATTGCC CGGTCTGCAGGACACCGCCGAGGCCAAGCGCCTGATCGGCGCCACCGCCTCGCTGGAATTCCGTGCCGTGGTCGAAGGCA ATGCCGAAGACGCCGTGCGCAGCGGCAGCATCCCGCCGGAAGCCAAGGTCTACCGCGTGCGTGACACCGGCGCGCCGGTG CTGCTCAACAAGCGCGCGCTGGTGACCGGTGACCAGATGGTCAGCGCCAGCGTCAGCACCGACCAGAACGGCATGCCCGC AGTGGCAGTGACGCTCAACAACGTGGCCGGCCAGCGCATGCTCGATTACACCAGCGCCAACGTCGGCAAGCTGATGTCGG TGGTCTACATCGAACGCATTCCCACCGTGACCATGGTCGACGGCAAGGAAGTGCGCAGCGTGCGGGTCAAGGAAGAGGCT CTGTCGCCGACCCGCATCGCTGGCGTGTTCGGCAAGAACTTCCAGACCACCGGTCTTGAGAAGGTGGAGGCCGAGAATCT GGCCAAGCTGCTCAAGTCCGGCTCGCTGGCCGCACCGATGGACTTCGTCGAGGAATACGTGATCGGCCCGAGCCTGGGTG CGGAGAACGTGGAGCGGGGCGTCACCGCGGTGGTGTATTCGTTCCTGTTCACGCTGGTGTTCTTCACCATCTATTACCGC GTGTTCGGCGCGATCACCTCGGTGGCGCTGCTGTTCAACCTGCTGATCGTGGTGGCGGTGATGTCGTTGTTCGGTGCCAC CATGACGCTGCCGGGGTTTGCCGGTCTGGCGTTGTCGGTGGGCCTGTCGGTGGACGCCAACGTGCTGATCAACGAGCGTA TCCGCGAAGAATTGCGCCTGGGTGTGCCGGCCAAATCGGCGATTGCGGCGGGTTACGAAAAGGCCGGCGGCACCATTCTG GACGCCAACCTTACCGGCCTGATCGTGGCGGTGGCTTTGTATGCCTTCGGCACCGGGCCGCTGCGCGGTTTTGCGTTGAC CATGATGATCGGTATTTTTGCCTCGATGTTCACTGCGATCACGGTTTCGCGTGCATTGGCGGTTCTGATCTATGGCCGCC GCAAGAAGCTCAAGTCTGTGGCCATCTGA Protein sequence : MVPRGTVAMLEFPRWKYFLILVVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDADLKSAGITPKAVTREGDS LMVRLPTLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAED IRTTLRDGRIAYRSVERRGDNSIQVSLGEGASADAARTALAKSQPTLTYDVSGQTISVKVPEAELKQIASGAIEQNLTTL RNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVEGNAEDAVRSGSIPPEAKVYRVRDTGAPV LLNKRALVTGDQMVSASVSTDQNGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEA LSPTRIAGVFGKNFQTTGLEKVEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYR VFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTIL DANLTGLIVAVALYAFGTGPLRGFALTMMIGIFASMFTAITVSRALAVLIYGRRKKLKSVAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-106 | 45 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 8e-107 | 45 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 6e-107 | 45 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 6e-107 | 45 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 6e-107 | 45 |
