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Name : rpoB (Clim_0196) Accession : YP_001942274.1 Strain : Chlorobium limicola DSM 245 Genome accession: NC_010803 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 214117 - 218055 bp Length : 3939 bp Strand : + Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme DNA sequence : ATGCAATTTGATAAAAGCGAGGTGCATGTGAAAGTGGCTGATGCAACACCAACACCGTCTATTGACTTTTCCAAAATACA AAGCATTATCGATCCCCCCGATTTATTAAAAGTTCAGTTAGATTCATTTCATAATTTTATTCAGGACAGCGTTCCTCTTG CAAAGCGCAAGGACCAGGGGCTCGAAAGGGTTCTTCGCAACGCTTTTCCCATAACCGATACTCGCGGGCTGTATTTGCTC GAATATATCTCCTATAGTTTCGACAAGCCTAAATATACCGTTGAGGACTGTATCGAGAGAGGGCTTACCTACGATGTTTC GCTCAAGGTAAAACTCAAACTTTCGTATAAGGATGAGCCGGATGAGCAGGACTGGAAGGAGACCATCCAGCAGGAAGTTT ATCTTGGCAGGATTCCCTACATGACCGAGCGGGGTACCTTTATCGTCAACGGCGCCGAACGTGTCGTCGTTGCTCAGCTG CACCGTTCTCCGGGGGTTGTGTTCAGTGAAGCTGTGCATCCGAACGGCAAGAAAATGTATTCGGCAAAAATCGTCCCCAC AAGAGGTTCGTGGATCGAGTTTCAGACCGATATCAATAACCAGATTTTCGTTTATATCGACCAGAAAAAGAACTTTCTGG TGAGTGCTCTTCTTCGGGCTATCGGATTCGCGAAAGATGAGGACATACTCGGTCTTTTCGATCTTGTCGAAGAGATCAAA ATGAGCGCCGGAAAGAAAGACCAGCTGATCGGCAAGTATCTCGCTTCTGATATCGTCGATATGCAGACAGGCGAGGTCGT CAGCGCCAGAACCGCTATCACCGAAGATATCTTCGAACAGATTCTTGCAGCCGGTTACAAGGCTGTCAAGGTCATGAAGA GCTATTCCGGCAGCGACAAAGGTCAGGACAAGTCCATTATTATCAACACCATTCTCAACGACAGCTCTGCTACCGAAGAG GAGGCGCTCGAGATCGTGTACGAGGAACTGAGGGCCAATGAAGCTCCTGATATCGATGCAGCACGAAGCTTCCTTGAAAG GACGTTCTTCAATCAGAAGAAATACGACCTCGGAGATGTCGGTCGATACAGGATCAGAAAAAAGCTGGCCAGGGAGTTCG AAGAACTGGTGACCTATCTCTCGGGGAAAAAAGAGCTCAGAGAGCTTTCAGACGGTATTTATCAGAAGATTCTGCAGACT ATCCAGTCATTTTCGGATGAGCCGGTCGGAGACGATATCCTCGTACTGACGCATTTCGATATCATTGCGGTTATCAATTA TCTGATCAAGCTTGTCAACGGCCAGGCAGAGGTTGACGATGTCGATCACCTTGCAAATCGCCGTGTCCGCTCCGTAGGCG AACAGCTTGCCGCACAGTTTGTCGTAGGTCTGGCAAGGATGGGCAAGAACGTCCGGGAAAAACTCAATTCACGCGACTCC GACAAGATCGCTCCGGCGGATCTTATCAATGCCCGTACGGTATCGAGTGTGGTTTCGAGTTTCTTTGCCACAAGCCAGTT GTCGCAGTTCATGGACCAGACCAATCCGCTTGCCGAGATGACCAACAAGCGCAGGGTTTCCGCTCTCGGACCCGGAGGTC TTACCCGTGAGCGTGCAGGTTTCGAGGTTCGTGACGTTCACTACACCCATTATGGAAGGCTTTGTCCTATCGAGACTCCT GAAGGTCCGAACATCGGTCTGATTTCATCGCTCTCTGTCTATGCGGAAATCAACGATAAAGGATTCATTCAGACTCCTTA CAGAGTGGTTGAAAAGGGACAGGTTACCGACAAGGTCGTTATGCTTTCGGCTGAAGATGAAGAGAACAAGATAACCGTAC CGGTTAGCGTTCCGCTTGACGAAAACAGGAAAATCGCTCTCGAATCGGTTCAGGCAAGGACCAAGGGTGACTATCCGCTT GTCCCCGCCGAGGACGTCAATTATATGGACGTTTCTCCGGTTCAGATTGTCAGTGCCGCTGCGGCATTGATTCCTTTTCT TGAGCATGATGACGGCAACCGTGCCCTTATGGGCGCAAACATGCAGCGTCAGGCAGTTCCACTCCTGACCTCGGAGGCTC CTGTCGTCGGTACCGGCATGGAAGCGAAGGTCGCTCGTGATTCACGATCGGTTATTGTTGCCGAAGAAGCCGGAACGGTG GAAGAGGTTACTGCGGACTACATCCGGGTCAGGTACGATATCGATACTGAAAATGAAGTGCATCTCTCGATGCTCGATCC GGATGAAGGCCTGAAAACATACAAGCTCATCAAGTTCAAGCGATCTAACCAGGACACCTGTATTTCGCAGAAATCGCTCG TTCGCACTGCACAGCGGGTTGCCAAGGGCGATGTGCTTGCAGACAGCTCCTCAACGGAAAACGGTGAGCTTGCACTTGGA AAAAATGTGCTGGTTGCCTTCATGCCGTGGCGAGGATACAACTTCGAGGATGCCATCATTCTGAGTGAGCGTCTTGTCTA TGACGATGTATTCACCTCGATTCACATTCACGAATTTGAGGCAAACGTACGCGATACCAAGCGTGGTGAGGAGCAGTTCA CCCGTGACATATACAATGTCAGTGAAGATGCCCTCAGAAACCTTGATGAAAACGGTATTGTGCGTATCGGTGCCGAAGTC AAGGAGCGCGATATTCTTGTTGGTAAAATCACCCCGAAAGGCGAAAGCGATCCTACCCCCGAAGAGAAACTGCTCCGGGC AATTTTCGGCGACAAGTCAAGCGATGTCAAGGATGCCTCGATGCACGTTCCTGCCGGAATGAAAGGCATTGTGATCAAGA CAAAACTTTTCAGTCGCAAGAAAAAAGTGGGACTTGACGTCAAGGATCGTATAGAGGCCGTGGACAAGCGGTATGACCAG AAAGAGTATGACCTGCGCAAGCGTTTCGCCAAGTGGCTGAACCAGCTGCTCGACGGCAAAAAGACGACAGGTATTTTCAA TGAAAAAGGAAAAGTGCTCGTAGCGGAAGGTTCGGTTTTCGATGAAAGTGTGCTTGCCCGTTTCAGTGGGCTTCCCTTTC TCGAATCAATCGATTTTTCCAAAGGGCTTGTCGAATCGAAAAAAGTCAATGAAAACGTTGTCCGTCTTGTCAAGGAGTTT CGTTTCAAACTCAAGGATATTGCAGATGAGAGGGAAAACGAAAAGTACAAGATAAATGTCGGCGACGAACTGCCTCCCGG TATAGAAGAGCTTGCAAAGGTTTATATCGCACAGAAGCGCAAGATTCAGGTAGGCGACAAGATGGCCGGTCGTCACGGTA ACAAGGGTGTAGTCGGCAAGATTCTCTCGATTGAGGATATGCCGTTTATGGAAGATGGCACGCCGGTTGATATCGTGCTC AATCCGCTGGGCGTTCCGAGTCGTATGAATATCGGCCAGTTGTACGAAACGTCACTCGGATGGGCGGCAAAAAAACTTGG AGTCAAATTCAAGACTCCGATTTTCAATGGAGCGACCTATGAAGAGGTCCAGAACGAACTTGAAAGAGCCGGCCTTCCAA TGCACGGCAAGGTCTCTCTGTTTGACGGTCGTACCGGTGAGAAATTCGATGACGAGGTGACGGTTGGCTATATCTATATG CTGAAGCTGAGCCACCTTGTGGATGACAAGATTCATGCCCGTTCAACCGGCCCATACTCGCTTATAACGCAGCAGCCTCT TGGCGGTAAAGCGCAGTTCGGTGGCCAGAGATTCGGTGAAATGGAGGTTTGGGCGCTTGAGGCCTATGGGGCCGCCAATA TTCTCAGAGAGATGCTGACGGTCAAGTCGGACGATGTTATCGGTCGTAACAAAACCTATGAGGCGATTGTCAAGGGCCAG AATCTGCCAGAACCGGGCACTCCGGAGTCGTTCAACGTTCTGGTACGGGAGCTTCAGGGTCTCGGACTTGAAATTCGCAT CGACGAGAGGGTTCCTTAG Protein sequence : MQFDKSEVHVKVADATPTPSIDFSKIQSIIDPPDLLKVQLDSFHNFIQDSVPLAKRKDQGLERVLRNAFPITDTRGLYLL EYISYSFDKPKYTVEDCIERGLTYDVSLKVKLKLSYKDEPDEQDWKETIQQEVYLGRIPYMTERGTFIVNGAERVVVAQL HRSPGVVFSEAVHPNGKKMYSAKIVPTRGSWIEFQTDINNQIFVYIDQKKNFLVSALLRAIGFAKDEDILGLFDLVEEIK MSAGKKDQLIGKYLASDIVDMQTGEVVSARTAITEDIFEQILAAGYKAVKVMKSYSGSDKGQDKSIIINTILNDSSATEE EALEIVYEELRANEAPDIDAARSFLERTFFNQKKYDLGDVGRYRIRKKLAREFEELVTYLSGKKELRELSDGIYQKILQT IQSFSDEPVGDDILVLTHFDIIAVINYLIKLVNGQAEVDDVDHLANRRVRSVGEQLAAQFVVGLARMGKNVREKLNSRDS DKIAPADLINARTVSSVVSSFFATSQLSQFMDQTNPLAEMTNKRRVSALGPGGLTRERAGFEVRDVHYTHYGRLCPIETP EGPNIGLISSLSVYAEINDKGFIQTPYRVVEKGQVTDKVVMLSAEDEENKITVPVSVPLDENRKIALESVQARTKGDYPL VPAEDVNYMDVSPVQIVSAAAALIPFLEHDDGNRALMGANMQRQAVPLLTSEAPVVGTGMEAKVARDSRSVIVAEEAGTV EEVTADYIRVRYDIDTENEVHLSMLDPDEGLKTYKLIKFKRSNQDTCISQKSLVRTAQRVAKGDVLADSSSTENGELALG KNVLVAFMPWRGYNFEDAIILSERLVYDDVFTSIHIHEFEANVRDTKRGEEQFTRDIYNVSEDALRNLDENGIVRIGAEV KERDILVGKITPKGESDPTPEEKLLRAIFGDKSSDVKDASMHVPAGMKGIVIKTKLFSRKKKVGLDVKDRIEAVDKRYDQ KEYDLRKRFAKWLNQLLDGKKTTGIFNEKGKVLVAEGSVFDESVLARFSGLPFLESIDFSKGLVESKKVNENVVRLVKEF RFKLKDIADERENEKYKINVGDELPPGIEELAKVYIAQKRKIQVGDKMAGRHGNKGVVGKILSIEDMPFMEDGTPVDIVL NPLGVPSRMNIGQLYETSLGWAAKKLGVKFKTPIFNGATYEEVQNELERAGLPMHGKVSLFDGRTGEKFDDEVTVGYIYM LKLSHLVDDKIHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAANILREMLTVKSDDVIGRNKTYEAIVKGQ NLPEPGTPESFNVLVRELQGLGLEIRIDERVP |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 48 |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_001942274.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 49 |
| rpoB | YP_001942274.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 48 |
| rpoB | YP_001942274.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 48 |
| rpoB | YP_001942274.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 48 |
| rpoB | YP_001942274.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 48 |
| rpoB | YP_001942274.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 48 |
| rpoB | YP_001942274.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 48 |
| rpoB | YP_001942274.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 45 |
| rpoB | YP_001942274.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 1e-161 | 44 |
| rpoB | YP_001942274.1 | DNA-directed RNA polymerase subunit beta | CP001581.1.gene3846. | Protein | 4e-165 | 44 |
