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Name : APP7_1788 (APP7_1788) Accession : YP_001969582.1 Strain : Actinobacillus pleuropneumoniae AP76 Genome accession: NC_010939 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 1982052 - 1986137 bp Length : 4086 bp Strand : + Note : - DNA sequence : ATGACGGTCGGATTGTGTAACCTCAACCAAATAAGAAAATCAGAAGGCTATCTAGCAATGGCATATTCATATTCCGAGAA AAAGCGTATTCGTAAGAGCTTTGGTAAACGTCCACAAGTTCTTAACGTACCTTATCTATTAACAATTCAGCTTGATTCTT ACGAGAAATTTATTCAAAGAGATTCAGATGGACAACAAGGTTTAGAAGCGGCATTCCGTTCTGTGTTCCCGATTGTAAGC AACAACGGAAGCACTGAATTACAATACGTTTCTTACGAATTAGGAGAGCCGGTATTTGATGTTCGTGAATGTCAAATTCG CGGTACAACCTATGCGGCACCATTACGCGTTAAACTTCGTTTAGTGACTTTCGACCGTGAAGCGGCGGCAGGCACTGTAA AAGATATTAAAGAACAAAACGTGTATATGGGCGAAATCCCATTAATGACCGACAACGGTACTTTCGTTATCAACGGTACT GAGCGTGTAATCGTATCTCAGTTACACCGTAGTCCGGGCGTATTCTTCGATTCTGACAAAGGTAAAACCCACTCATCAGG TAAAGTGCTTTATAACGCACGTATTATTCCTTACCGTGGTTCTTGGTTAGATTTCGAGTTTGACCCGAAAGACAATCTTT ATGCACGTATCGACCGCCGCCGTAAATTACCGGCAACTATTATTTTACGTGCTTTAGGTTATACGACCGAAGAAATCTTA TCGATGTTCTTCGATAAAGTGAACTTTGAAATCCAAGATAATAAATTATTAATGACATTGGTGCCGGAACGCTTACGTGG CGAAACCGCTGCGTTTGATATTGAAGCGAACGGTAAAGTGTACGTTGAACGTGGTCGTCGTATTACCGCACGTCATATTC GCACATTAGAAAAAGACGGCATTACTCAAATCGAAGTGCCGGTAGAGTACATCGTAGGTAAAGTTGCAGCGAAAGATTAT GTTGATCTTTCAACCGGAGAATTAGTTTGTCCGGCGAATATGGAAATCTCAATGGAGATGTTAGCGAAATTATCGCAAGC AGGTTACAAAGAGATCGAAGTACTATTTACTAACGACTTAGATCACGGTCCGTATATTTCTGAAACCTTACGTGTTGATC CAACTTATGACCGCTTAAGTGCATTAGTAGAAATCTACCGTATGATGCGTCCGGGCGAGCCACCGACAAAAGAAGCGGCG GAAGCGTTATTCGACAATATGTTCTTCTCAGCAGACCGTTATGACTTATCGGCAGTTGGTCGTATGAAGTTCAACCGTTC GTTAAATCTTGAAGAAGGCGTAGGTTCAGGCATTTTAAGTAATGACGACATTACCGGCGTGATGAAGAAATTAATTGAAA TCCGTAACGGTCGTGGCGAAGTGGACGATATCGACCACTTAGGTAACCGTCGTATTCGTTCGGTAGGCGAAATGGCTGAA AACCAATTCCGTATCGGTTTAGTGCGTGTAGAACGTGCCGTGCGTGAGCGTTTATCATTAGGCGATTTAGACGGCATTAC TCCGCAAGATTTAATTAATGCGAAGCCGATTTCTGCGGCAGTGAAAGAGTTCTTCGGTTCTTCACAACTTTCGCAATTTA TGGACCAAAATAACCCGCTTTCGGAGGTTACCCATAAACGTCGTATTTCAGCATTAGGTCCGGGCGGTTTAACCCGCGAA CGTGCAGGCTTTGAGGTTCGAGACGTACATACTACTCACTATGGTCGTTTATGTCCGATCGAAACCCCTGAAGGTCCGAA CATCGGTTTGATCAACTCACTTTCAGTATATGCGCGTACTAATAACTACGGTTTCTTAGAAACGCCGTTCCGTAAAGTAG TGAACGGTCAAGTAACCGAAGATATCGAGTATTTATCGGCAATCGAAGAAGGTAACTACGTTATCGCTCAGGCTAACTCA AACTTAGATGAGAATTTCCGTTTTACCGATACTTACGTAACTTGTCGTGGCGAACACGGTGAGTCAGGTTTATACAAACC GGAAGATATTCACTATATGGATATCTCAACACAACAAGTGGTTTCTGTTGCGGCAGCGTTAATTCCGTTCCTTGAGCATG ACGATGCGAACCGTGCGTTAATGGGTGCGAACATGCAACGTCAGGCTGTTCCGACATTACGTGCGGATAAACCGTTAGTC GGTACCGGTATGGAAAAACCAATCGCACTTGACTCAGGTGTAGCGATTGTGGCGAAACGTGGTGGTATCGTTCAACGTGT TGATGCCTCTCGTATCGTAGTGAAAGTAAACGAAGATGAAACGATTCCGGGCGAAGCGGGTATCGACATCTATAACTTAA TTAAATATACCCGTTCAAATCAAAATACCTGTATCAACCAAATTCCTTGTGTGAATTTAGGCGAGCCGGTAGCACGTGGC GAGATCTTAGCGGACGGTCCTTCAACAGATTTAGGTGAATTAGCATTAGGTCAAAATATTCGTGTGGCATTCATGCCATG GAACGGTTATAACTTCGAAGACTCAATGTTAGTTTCTGAGCGTGTAGTACAAGAAGATCGTTTCACGACAATCCACATCC AAGAGCTATCTTGTGTGGCACGTGATACCAAACTTGGTGCGGAAGAAATTACAGCGGATATCCCGAACGTAGGCGAATCG GCATTAAGCAAACTTGATGAATCAGGTATCGTTTACGTGGGTGCGGAAGTTAAAGGCGGCGACATCTTAGTTGGTAAAGT AACGCCTAAAGGCGAAACCCAATTAACGCCGGAAGAAAAACTTTTACGTGCGATCTTCGGTGAGAAAGCATCTGATGTTA AAGATTCTTCATTACGTGTACCAAACGGTACTTCAGGTACGGTTATTGACGTTCAAGTATTTACTCGTGACGGCGTTGAA AAAGATAAACGTGCGTTAGAAATCGAGGAAATGCAGCTTAAAGAAGCGAAGAAAGATTTAACTGAAGAGTTAGAAATTTT AGAAGCCGGTTTATTTACTCGTGTTCGCAATTTATTAATCGAAGGCGGCGTATCTGAAGCTGAATTAGATAAAGTTGCTC GTGAGAAATGGTTAGAACAAACCTTAGATGACGAAGCGAAACAAAATCAATTAGAACAGCTTGCGGAACAGCACGAAGAG TTACGTAAAGAGTTTGAACGTAAACTTGAAATTAAACGCAACAAGATCATCCAAGGTGACGATTTAGCACCTGGTGTGTT AAAAGTGGTTAAAGTTTACTTAGCGGTTCGTCGCCAAATCCAACCAGGTGATAAAATGGCGGGTCGTCACGGTAACAAAG GTGTTATCTCGAAAATCAACCCGGTTGAAGATATGCCGTACGATGAAAACGGCCAACCGGTTGAGATCGTATTGAACCCG CTGGGCGTACCTTCACGTATGAACATCGGTCAGATCTTAGAAACGCACTTAGGTTTAGCGGCGAAAGGTATCGGCGACCA AATTAACGCAATGATCAAACAACAACAATCTGTTGCGAAATTGCGTGAATATATCCAAAAAGCATACGATTTAGGTCACG GTTCACAATCAGTAGACTTAAGCACCTTTACCGATGAAGAAGTGTTGCGTTTAGCAGAAAACTTACGTAAAGGTTTACCG CTTGCAACTCCGGTATTCGACGGTGCGCATGAAAGCGAAATCAAAGGCTTATTAGAATTAGGCGGCTTACCGACTTCAGG TCAAATTACTTTATTTGACGGTCGTACCGGTGAGAAATTCGAGCGTCCTGTAACCGTAGGTTATATGTATATGCTCAAAT TGAACCACTTGGTTGATGACAAAATGCACGCGCGTTCAACCGGTTCTTATAGTCTTGTTACTCAACAACCGCTTGGTGGT AAAGCACAGTTCGGTGGTCAGCGTTTCGGTGAGATGGAGGTTTGGGCATTAGAAGCATACGGTGCCGCTTACACCTTACA AGAAATGCTAACGGTTAAATCGGATGACGTGAACGGTCGTACGAAGATGTACAAAAACATCGTGGACGGCACACATCAAA TGGAACCGGGTATGCCGGAATCATTCAACGTATTGTTGAAAGAGATTCGTGCCTTAGGTATTGATATGGAGCTTGACGAA GAATAA Protein sequence : MTVGLCNLNQIRKSEGYLAMAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIQRDSDGQQGLEAAFRSVFPIVS NNGSTELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKLRLVTFDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGT ERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYARIDRRRKLPATIILRALGYTTEEIL SMFFDKVNFEIQDNKLLMTLVPERLRGETAAFDIEANGKVYVERGRRITARHIRTLEKDGITQIEVPVEYIVGKVAAKDY VDLSTGELVCPANMEISMEMLAKLSQAGYKEIEVLFTNDLDHGPYISETLRVDPTYDRLSALVEIYRMMRPGEPPTKEAA EALFDNMFFSADRYDLSAVGRMKFNRSLNLEEGVGSGILSNDDITGVMKKLIEIRNGRGEVDDIDHLGNRRIRSVGEMAE NQFRIGLVRVERAVRERLSLGDLDGITPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRE RAGFEVRDVHTTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPFRKVVNGQVTEDIEYLSAIEEGNYVIAQANS NLDENFRFTDTYVTCRGEHGESGLYKPEDIHYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPLV GTGMEKPIALDSGVAIVAKRGGIVQRVDASRIVVKVNEDETIPGEAGIDIYNLIKYTRSNQNTCINQIPCVNLGEPVARG EILADGPSTDLGELALGQNIRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEEITADIPNVGES ALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDGVE KDKRALEIEEMQLKEAKKDLTEELEILEAGLFTRVRNLLIEGGVSEAELDKVAREKWLEQTLDDEAKQNQLEQLAEQHEE LRKEFERKLEIKRNKIIQGDDLAPGVLKVVKVYLAVRRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGQPVEIVLNP LGVPSRMNIGQILETHLGLAAKGIGDQINAMIKQQQSVAKLREYIQKAYDLGHGSQSVDLSTFTDEEVLRLAENLRKGLP LATPVFDGAHESEIKGLLELGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDE E |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 70 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 70 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 85 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 85 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 85 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 85 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 85 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 84 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 70 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 70 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 70 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 70 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 70 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 70 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 70 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 65 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| APP7_1788 | YP_001969582.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 63 |
