Gene Information

Name : Smlt2848 (Smlt2848)
Accession : YP_001972604.1
Strain : Stenotrophomonas maltophilia K279a
Genome accession: NC_010943
Putative virulence/resistance : Virulence
Product : RNA polymerase sigma factor
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2887398 - 2887922 bp
Length : 525 bp
Strand : +
Note : similarity:fasta; ECA0813; ecarotovora_atroseptica; RNA polymerase sigma factor; length 174 aa; id=49.4%; E()=1.4e-28; 172 aa overlap; query 3-167 aa; subject 1-171 aa; similarity:fasta; BP0349; bpertussis; heme uptake regulator; length 169 aa; id=50.0%;

DNA sequence :

ATGCCGATGGCCGTGCCCGCCGCCTCCAGCACCGCGCTGGCGGGGTTCTACCGCGAACACCATGGCTGGCTGCTGGGCTG
GCTGCGCCGCCGCACCCACAACGCCGACTGCGCCGCCGACCTGACCCAGGACACCTTCCTGCGCCTGCTCAGCCGGCGCG
TCGATCCGTCCGAACTGCGCCTGCCGCGCGCCTATCTCAGCACCATCGCGCACGCGCTGCTGGTCAACCACTGGCAGCGC
GCGGACCTGGAGCGCGCCTATCTGACCGCGCTGGCCGCACAACCGGAGCCGGTGCATCCCTCTGCGGAGGAGCGCACGCA
GGCGCTGCAGCTGCTGCATGCCATCGCTGACATGCTGTCCGGCCTGGCCGAGCGGCCACGGCGTGCCTTCCTGCTGGCCC
GGCTGTCCGGACTGGGCTATGCGGAGATCGGCCAACAGCTGGGCGTGTCCGAGCGCATGGTCAAGAAGTACATGGCGCAG
GCGATGCTGCATTGCCTGTGCCTGTCCGGCGACGCGGCGGCATGA

Protein sequence :

MPMAVPAASSTALAGFYREHHGWLLGWLRRRTHNADCAADLTQDTFLRLLSRRVDPSELRLPRAYLSTIAHALLVNHWQR
ADLERAYLTALAAQPEPVHPSAEERTQALQLLHAIADMLSGLAERPRRAFLLARLSGLGYAEIGQQLGVSERMVKKYMAQ
AMLHCLCLSGDAAA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	8e-32	45

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Smlt2848	YP_001972604.1	RNA polymerase sigma factor	VFG1049	Protein	3e-32	45