Gene Information

Name : clpB (RHECIAT_CH0004021)
Accession : YP_001980130.1
Strain : Rhizobium etli CIAT 652
Genome accession: NC_010994
Putative virulence/resistance : Virulence
Product : chaperone heat-shock protein
Function : -
COG functional category : O : Posttranslational modification, protein turnover, chaperones
COG ID : COG0542
EC number : -
Position : 4086107 - 4088707 bp
Length : 2601 bp
Strand : -
Note : -

DNA sequence :
ATGAATATCGAGAAATATTCGGAGCGGGTGCGCGGTTTCATCCAGTCGGCGCAGACCTATGCGCTGGCGCAGGGCCATCA
GCAATTTTCGCCCGAGCATATCCTCAAAGTCCTGCTCGATGACGATCAGGGCATGGCGGCGTCGCTGATCGAGCGCGCCG
GCGGTGATGCCAAGGCTGCTCGCCTTGCCAATGACGCGGCACTCGCCAAGTTGCCGAAGATCTCCGGCGGCAACGGCAAT
ATCTATCTGGCGCAGCCGCTTGCCAAGGTGCTTTCGACTGCCGAAGAGGCGGCGAAGAAGGCCGGCGACAGTTTCGTCAC
CGTTGAACGCCTTCTGCAGGCGCTGGCGATCGAATCCTCGGCCTCGACCTATTCGACGCTGAAGAATGCCGGCGTCACAG
CCCAGGGGCTCAACCAGGTCATCAACGATATCCGCAAGGGTCGGACGGCCGATTCCTCCAACGCCGAGCAGGGCTTCGAT
TCCCTGAAGAAATTTGCGCGTGATCTGACCGGTGAGGCCCGCGAGGGCAAGCTCGATCCGGTGATCGGCCGCGACGACGA
AATCCGCCGCACCATCCAGGTCCTGTCGCGGCGCACCAAGAACAATCCGGTGCTGATCGGCGAGCCGGGCGTCGGCAAGA
CGGCGATCGTCGAAGGTTTGGCGCTGCGCATCGTCAATGGCGACGTGCCGGAATCGCTCAAGGACAAGAAGCTGATGGCG
CTCGACATGGGCGCGCTGATTGCCGGTGCGAAATATCGCGGTGAATTCGAAGAGCGGCTGAAGGCCGTGCTCAACGAAGT
GCAGGCGGAAAACGGCGAGATCATCCTGTTCATCGACGAGATGCACACGCTGGTCGGCGCCGGCAAGGCCGATGGGGCGA
TGGATGCTTCCAACCTTCTCAAGCCCGCGCTTGCCCGCGGCGAGCTGCATTGCGTTGGTGCGACCACGCTCGACGAATAT
CGCAAACATGTCGAGAAAGATCCGGCGCTTGCCCGCCGCTTCCAGCCCGTGGTTGTCGACGAGCCGACGGTCGAAGATAC
GATCTCGATCCTGCGCGGCCTCAAGGAAAAATACGAGCAGCATCACAAGGTGCGCATCGCCGATGCGGCGCTTGTCGCCG
CCGCGACGCTGTCCAATCGCTACATCACCGACCGTTTCCTGCCCGACAAGGCGATCGATCTGATGGATGAGGCGGCAGCG
CGGCTGCGCATGCAGGTGGATTCCAAGCCGGAGGAGCTCGACGAGCTCGACCGCCGCATCATCCAGCTGAAGATCGAGCG
CGAGGCGCTGAAGAAGGAAACCGACGTCGCGTCCGCCGACCGGCTGAAGCGGCTGGAGACCGAACTGACCACTCTTGAAG
AGGAAGCCGATGCGCTGACGGCCCGCTGGCAGGCGGAAAAGCAGAAGCTCGGCCTTGCCGCCGATCTCAAGAAGCAGCTT
GACGACGCCCGCAACGAGCTGGCGATTGCCCAGCGCAAGGGTGAATTCCAGCGTGCCGGCGAGCTGACCTATGGTGTCAT
TCCGGACCTCGAAAAGCAGCTGGTCGACGCCGAAAAGCAGGATGGCGAACGCGGCGCGATGGTTCAGGAGGTGGTGATCC
CCGACAATATCGCCCACGTCGTTTCCCGCTGGACCGGCATCCCCGTCGACAAGATGCTGGAGGGTGAACGCGACAAGCTG
CTTCGGATGGAAGACGAGCTCGCGAAATCGGTGATCGGCCAGGGCGATGCGGTTCAGGCCGTGTCGCGCGCGGTCCGCCG
CGCCCGCGCCGGCCTGCAGGATCCGAACCGCCCGATCGGCTCGTTCATTTTCCTCGGCCCGACCGGCGTCGGCAAGACGG
AGCTCACCAAGGCGCTCGCCCGCTTCCTGTTCGATGACGAAACCGCAATGGTGCGCATGGATATGTCGGAATACATGGAG
AAACACTCCGTTGCCCGGCTGATTGGCGCGCCTCCCGGCTATGTCGGTTATGACGAAGGTGGAGCGCTGACGGAGGCGGT
CCGCCGCAGACCTTATCAGGTCGTGCTGTTCGACGAGATCGAGAAGGCGCATCCAGACGTCTTCAACATCCTGCTGCAGG
TGCTAGACGATGGCCGTCTCACCGACGGCCAGGGCCGGACGGTCGATTTCCGCAACACGATGGTCATCATGACCTCGAAC
CTCGGCGCCGAATATCTGACGCAGCTTAAGGACGGTGACGACAGCGACACGGTTCGCGAACAGGTTATGGAGGTCGTGCG
CGGGCATTTCCGGCCGGAGTTCCTGAACCGTATCGACGAGATCATCCTCTTCCATCGCTTGAAGCGCGAGGAGATGGGCG
CGATCGTCGATATCCAGCTGAAGCGGCTTGTGGCCCTGCTGTCGGAGCGCAAGATAGTCATCGATCTCGATGAGGAAGCC
CGCCACTGGCTGGCGAACAAGGGGTATGACCCGGTCTACGGCGCACGGCCGCTGAAGCGGGTGATCCAGAAGTTCGTGCA
AGATCCGCTGGCCGAGCAGATTCTGTCCGGTCAGGTGCCGGATGGATCGACGGTCAAAGTGACAAACGGGTCGGATCGGC
TGCAGTTCCGGACCCGGCAGACGGTCAGCGAAGCGGCATAG

Protein sequence :
MNIEKYSERVRGFIQSAQTYALAQGHQQFSPEHILKVLLDDDQGMAASLIERAGGDAKAARLANDAALAKLPKISGGNGN
IYLAQPLAKVLSTAEEAAKKAGDSFVTVERLLQALAIESSASTYSTLKNAGVTAQGLNQVINDIRKGRTADSSNAEQGFD
SLKKFARDLTGEAREGKLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRIVNGDVPESLKDKKLMA
LDMGALIAGAKYRGEFEERLKAVLNEVQAENGEIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCVGATTLDEY
RKHVEKDPALARRFQPVVVDEPTVEDTISILRGLKEKYEQHHKVRIADAALVAAATLSNRYITDRFLPDKAIDLMDEAAA
RLRMQVDSKPEELDELDRRIIQLKIEREALKKETDVASADRLKRLETELTTLEEEADALTARWQAEKQKLGLAADLKKQL
DDARNELAIAQRKGEFQRAGELTYGVIPDLEKQLVDAEKQDGERGAMVQEVVIPDNIAHVVSRWTGIPVDKMLEGERDKL
LRMEDELAKSVIGQGDAVQAVSRAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDDETAMVRMDMSEYME
KHSVARLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTMVIMTSN
LGAEYLTQLKDGDDSDTVREQVMEVVRGHFRPEFLNRIDEIILFHRLKREEMGAIVDIQLKRLVALLSERKIVIDLDEEA
RHWLANKGYDPVYGARPLKRVIQKFVQDPLAEQILSGQVPDGSTVKVTNGSDRLQFRTRQTVSEAA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
STY0294 NP_454876.1 ClpB-like protein Not tested SPI-6 Protein 2e-105 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
clpB YP_001980130.1 chaperone heat-shock protein VFG2084 Protein 2e-105 43
clpB YP_001980130.1 chaperone heat-shock protein VFG2076 Protein 2e-116 42