Name : clpB (RHECIAT_CH0004021) Accession : YP_001980130.1 Strain : Rhizobium etli CIAT 652 Genome accession: NC_010994 Putative virulence/resistance : Virulence Product : chaperone heat-shock protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 4086107 - 4088707 bp Length : 2601 bp Strand : - Note : - DNA sequence : ATGAATATCGAGAAATATTCGGAGCGGGTGCGCGGTTTCATCCAGTCGGCGCAGACCTATGCGCTGGCGCAGGGCCATCA GCAATTTTCGCCCGAGCATATCCTCAAAGTCCTGCTCGATGACGATCAGGGCATGGCGGCGTCGCTGATCGAGCGCGCCG GCGGTGATGCCAAGGCTGCTCGCCTTGCCAATGACGCGGCACTCGCCAAGTTGCCGAAGATCTCCGGCGGCAACGGCAAT ATCTATCTGGCGCAGCCGCTTGCCAAGGTGCTTTCGACTGCCGAAGAGGCGGCGAAGAAGGCCGGCGACAGTTTCGTCAC CGTTGAACGCCTTCTGCAGGCGCTGGCGATCGAATCCTCGGCCTCGACCTATTCGACGCTGAAGAATGCCGGCGTCACAG CCCAGGGGCTCAACCAGGTCATCAACGATATCCGCAAGGGTCGGACGGCCGATTCCTCCAACGCCGAGCAGGGCTTCGAT TCCCTGAAGAAATTTGCGCGTGATCTGACCGGTGAGGCCCGCGAGGGCAAGCTCGATCCGGTGATCGGCCGCGACGACGA AATCCGCCGCACCATCCAGGTCCTGTCGCGGCGCACCAAGAACAATCCGGTGCTGATCGGCGAGCCGGGCGTCGGCAAGA CGGCGATCGTCGAAGGTTTGGCGCTGCGCATCGTCAATGGCGACGTGCCGGAATCGCTCAAGGACAAGAAGCTGATGGCG CTCGACATGGGCGCGCTGATTGCCGGTGCGAAATATCGCGGTGAATTCGAAGAGCGGCTGAAGGCCGTGCTCAACGAAGT GCAGGCGGAAAACGGCGAGATCATCCTGTTCATCGACGAGATGCACACGCTGGTCGGCGCCGGCAAGGCCGATGGGGCGA TGGATGCTTCCAACCTTCTCAAGCCCGCGCTTGCCCGCGGCGAGCTGCATTGCGTTGGTGCGACCACGCTCGACGAATAT CGCAAACATGTCGAGAAAGATCCGGCGCTTGCCCGCCGCTTCCAGCCCGTGGTTGTCGACGAGCCGACGGTCGAAGATAC GATCTCGATCCTGCGCGGCCTCAAGGAAAAATACGAGCAGCATCACAAGGTGCGCATCGCCGATGCGGCGCTTGTCGCCG CCGCGACGCTGTCCAATCGCTACATCACCGACCGTTTCCTGCCCGACAAGGCGATCGATCTGATGGATGAGGCGGCAGCG CGGCTGCGCATGCAGGTGGATTCCAAGCCGGAGGAGCTCGACGAGCTCGACCGCCGCATCATCCAGCTGAAGATCGAGCG CGAGGCGCTGAAGAAGGAAACCGACGTCGCGTCCGCCGACCGGCTGAAGCGGCTGGAGACCGAACTGACCACTCTTGAAG AGGAAGCCGATGCGCTGACGGCCCGCTGGCAGGCGGAAAAGCAGAAGCTCGGCCTTGCCGCCGATCTCAAGAAGCAGCTT GACGACGCCCGCAACGAGCTGGCGATTGCCCAGCGCAAGGGTGAATTCCAGCGTGCCGGCGAGCTGACCTATGGTGTCAT TCCGGACCTCGAAAAGCAGCTGGTCGACGCCGAAAAGCAGGATGGCGAACGCGGCGCGATGGTTCAGGAGGTGGTGATCC CCGACAATATCGCCCACGTCGTTTCCCGCTGGACCGGCATCCCCGTCGACAAGATGCTGGAGGGTGAACGCGACAAGCTG CTTCGGATGGAAGACGAGCTCGCGAAATCGGTGATCGGCCAGGGCGATGCGGTTCAGGCCGTGTCGCGCGCGGTCCGCCG CGCCCGCGCCGGCCTGCAGGATCCGAACCGCCCGATCGGCTCGTTCATTTTCCTCGGCCCGACCGGCGTCGGCAAGACGG AGCTCACCAAGGCGCTCGCCCGCTTCCTGTTCGATGACGAAACCGCAATGGTGCGCATGGATATGTCGGAATACATGGAG AAACACTCCGTTGCCCGGCTGATTGGCGCGCCTCCCGGCTATGTCGGTTATGACGAAGGTGGAGCGCTGACGGAGGCGGT CCGCCGCAGACCTTATCAGGTCGTGCTGTTCGACGAGATCGAGAAGGCGCATCCAGACGTCTTCAACATCCTGCTGCAGG TGCTAGACGATGGCCGTCTCACCGACGGCCAGGGCCGGACGGTCGATTTCCGCAACACGATGGTCATCATGACCTCGAAC CTCGGCGCCGAATATCTGACGCAGCTTAAGGACGGTGACGACAGCGACACGGTTCGCGAACAGGTTATGGAGGTCGTGCG CGGGCATTTCCGGCCGGAGTTCCTGAACCGTATCGACGAGATCATCCTCTTCCATCGCTTGAAGCGCGAGGAGATGGGCG CGATCGTCGATATCCAGCTGAAGCGGCTTGTGGCCCTGCTGTCGGAGCGCAAGATAGTCATCGATCTCGATGAGGAAGCC CGCCACTGGCTGGCGAACAAGGGGTATGACCCGGTCTACGGCGCACGGCCGCTGAAGCGGGTGATCCAGAAGTTCGTGCA AGATCCGCTGGCCGAGCAGATTCTGTCCGGTCAGGTGCCGGATGGATCGACGGTCAAAGTGACAAACGGGTCGGATCGGC TGCAGTTCCGGACCCGGCAGACGGTCAGCGAAGCGGCATAG Protein sequence : MNIEKYSERVRGFIQSAQTYALAQGHQQFSPEHILKVLLDDDQGMAASLIERAGGDAKAARLANDAALAKLPKISGGNGN IYLAQPLAKVLSTAEEAAKKAGDSFVTVERLLQALAIESSASTYSTLKNAGVTAQGLNQVINDIRKGRTADSSNAEQGFD SLKKFARDLTGEAREGKLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRIVNGDVPESLKDKKLMA LDMGALIAGAKYRGEFEERLKAVLNEVQAENGEIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCVGATTLDEY RKHVEKDPALARRFQPVVVDEPTVEDTISILRGLKEKYEQHHKVRIADAALVAAATLSNRYITDRFLPDKAIDLMDEAAA RLRMQVDSKPEELDELDRRIIQLKIEREALKKETDVASADRLKRLETELTTLEEEADALTARWQAEKQKLGLAADLKKQL DDARNELAIAQRKGEFQRAGELTYGVIPDLEKQLVDAEKQDGERGAMVQEVVIPDNIAHVVSRWTGIPVDKMLEGERDKL LRMEDELAKSVIGQGDAVQAVSRAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDDETAMVRMDMSEYME KHSVARLIGAPPGYVGYDEGGALTEAVRRRPYQVVLFDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTMVIMTSN LGAEYLTQLKDGDDSDTVREQVMEVVRGHFRPEFLNRIDEIILFHRLKREEMGAIVDIQLKRLVALLSERKIVIDLDEEA RHWLANKGYDPVYGARPLKRVIQKFVQDPLAEQILSGQVPDGSTVKVTNGSDRLQFRTRQTVSEAA |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 2e-105 | 42 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
clpB | YP_001980130.1 | chaperone heat-shock protein | VFG2084 | Protein | 2e-105 | 43 |
clpB | YP_001980130.1 | chaperone heat-shock protein | VFG2076 | Protein | 2e-116 | 42 |