|
Name : secD (BCAL3306) Accession : YP_002232409.1 Strain : Genome accession: NC_011000 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 3622333 - 3624354 bp Length : 2022 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGAATCGTTATCCACTCTGGAAATATGTCGTGATGGTCGTGGCGCTCGCCATCGGCCTTCTGTACACATTGCCCAACTT CTTCGGCGAAGCGCCGGCGGTGCAGGTGTCGAGCGGCAAGGCCACGGTCAAGCTCGACTCGACCACGCTGACCCAGGTCG AATCGGCGCTCGCATCCGCGCAGATCAAGCCGGACGACGTCACCTTCGAGAACACGGCGACCAACGCGAACATCCGCGTG CGCCTGAAGGACACCGATACGCAGCTGCGCGTCAAGGACCTGCTGCAGAAGTCGCTGAACGCCGACCCGAACGATCCGCA GTACGTCGTCGCACTGAACCTGCAGAGCGCGTCGCCGCGCTGGCTGACCGCCCTGCACGCGCTGCCGATGTATCTCGGCC TCGACCTGCGCGGCGGTGTGCACTTCCTGCTCCAGGTCGACATGACGGGCGCGCTCACCAAGAAGCTCGACTCCGACGCC TCCGACGCGCGCTCGCTGCTGCGCGACAAGAACATCCGCGACGGCGGCGTGAGCCGCGTCGAGCAGTCCGTGGTCGTCAA CTTCAGCGATGCGCAGACGGCGGAAGACGCCCGCAAGGTGCTCGCCGCGTCGATCACCGAGCTGCAATGGGCGACCCAGC CCGGCGGCGGCGGCACGCAGGTGGTTGGCACGTTTACGCCGGCCGTGCAGAAGGCCGTCGAGGACGCCGCGCTCAAGCAG AACCTGACGACGCTCCACAACCGCGTGAACGAACTCGGCGTGTCCGAGCCGATCCTGCAGCAGCAAGGCAGCGACCGCAT CGTCGTCGAACTGCCGGGCGTGCAGGACACCGCGAAGGCGAAGGACATCATCGGCCGCACCGCGACGCTCGAGGCGCGCC TCGCCGACCCGATCAACACGCACCCGAACCCGAACGACCCCGTGCCGCCGGGCGAGGAGCTGTTCACGCAGGGCATCCAG GCGCCCGTGCTGCTGAAGAAGGACGTGATCTTCACCGGCGACCGCATCATCGACGCATCGGCCGGTTTCGACGAACACCA GCGTCCGTCGGTCAACATCCGCCTCGATTCGGCGGGCGGCCGCGCGGTGCGCACGGTGTCGCGCGACAACATCGGCAAGC CGATGGCGATGGTGCTGTTCGAGAAGGGCAAGGGCGAAGTGCTGACGGTCGCGACGATCCAGTCCGAACTCGGCGACCGC TTCCAGATCACGGGCCAGCCGACGCCGCAGGCCGCGGCCGACCTCGCGCTGCTGCTGCGCGCCGGTTCGCTCGCCGCACC GATGGACATCATCGAGGAACGCACGATCGGCCCGAGCCTCGGCGCCGACAACATCAAGATGGGCGTGCACTCGGTGATCT GGGGCTTCTGTGCGATCGCCGTGTTCATGATCGCGTACTACATGCTGTTCGGCGTGGTGTCGGTGATCGGCCTGTCGGTG AACCTGCTGCTGCTCGTCGCCGTGCTGTCGCTGATGCAGGCGACGCTGACGCTGCCGGGTATCGCGGCCATCGCGCTCGC GCTCGGTATGGCGATCGACTCGAACGTGCTGATCAACGAGCGCGTGCGTGAAGAACTGCGCGCCGGCCAGCCGCCGCAGC TCGCGATCCAGGCCGGCTACGCACACGCGTGGGCGACGATTCTCGACTCGAACGTCACGACGCTGATCGCCGGCCTCGCG CTGCTCGCGTTCGGCTCGGGCCCGGTTCGCGCGTTCGCGATCGTGCACTGCCTCGGTATCCTGACGTCGATGTTCTCCGC GGTGTTCTTCTCGCGCGGGATCGTCAACCTCTGGTACGGCGGCCGCAAGAAGCTGAAGTCGCTCGCGATCGGCCAGGTGT GGAAGCCGGAAGGCGCCGCTGCCGCCGCGTCGTTCACCGATGCGGACGAATCGACCGACACCGCGCGCGCCGCGAAGCTC GCCGCCCCGGCGAAGGGCAACGCGCCGCGCGCCGGCAAGCCGCAGCTGCGCAACCGCGCGCAGCAAGGCGTGTCGCCGAA GAAACCGGGCTCGACCCAATAA Protein sequence : MNRYPLWKYVVMVVALAIGLLYTLPNFFGEAPAVQVSSGKATVKLDSTTLTQVESALASAQIKPDDVTFENTATNANIRV RLKDTDTQLRVKDLLQKSLNADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA SDARSLLRDKNIRDGGVSRVEQSVVVNFSDAQTAEDARKVLAASITELQWATQPGGGGTQVVGTFTPAVQKAVEDAALKQ NLTTLHNRVNELGVSEPILQQQGSDRIVVELPGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGIQ APVLLKKDVIFTGDRIIDASAGFDEHQRPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTVATIQSELGDR FQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFMIAYYMLFGVVSVIGLSV NLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLA LLAFGSGPVRAFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLKSLAIGQVWKPEGAAAAASFTDADESTDTARAAKL AAPAKGNAPRAGKPQLRNRAQQGVSPKKPGSTQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 6e-94 | 42 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 6e-94 | 42 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 3e-94 | 42 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 7e-94 | 42 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 6e-94 | 42 |
