Gene Information

Name : Smal_2301 (Smal_2301)
Accession : YP_002028687.1
Strain : Stenotrophomonas maltophilia R551-3
Genome accession: NC_011071
Putative virulence/resistance : Virulence
Product : ECF subfamily RNA polymerase sigma-24 subunit
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 2585827 - 2586351 bp
Length : 525 bp
Strand : +
Note : TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_4176 probable sigma-70 factor, ECF subfamily

DNA sequence :

ATGCCGATGGCCGTGCCCGCCGCCTCCAGCACTGCGCTGGCGGGGTTCTACCGCGAACACCATGGCTGGCTGCTGGGCTG
GCTGCGCCGCCGCACCCACAACGCCGACTGCGCCGCCGACCTGACCCAGGACACCTTCGTGCGCCTGCTCGGCCGTCGTG
TCGATCCGTCCGAACTGCGCCTGCCGCGTGCCTATCTCAGCACCATCGCGCACGCGCTGCTGGTCAATCACTGGCAGCGC
GCGGACCTGGAGCGCGCCTACCTGACGGCCTTGGCCGCGCAGCCGGAGCCGGTGCATCCATCGGCGGAGGAGCGCACGCA
GGCGCTGCAGCTGCTGCATGCCATCGCCGACATGCTGTCCGGCCTGGCCGAGCGGCCACGCCGTGCGTTCCTGATGGCAC
GACTGTCCGGCCTGGGCTATGCGGAGATCGGCCAACAACTGGGCGTGTCCGAACGCATGGTCAAGAAATACATGGCGCAG
GCGATGCTGCATTGCCTGCGCCTGTCCGGCGACGCAACAGCATGA

Protein sequence :

MPMAVPAASSTALAGFYREHHGWLLGWLRRRTHNADCAADLTQDTFVRLLGRRVDPSELRLPRAYLSTIAHALLVNHWQR
ADLERAYLTALAAQPEPVHPSAEERTQALQLLHAIADMLSGLAERPRRAFLMARLSGLGYAEIGQQLGVSERMVKKYMAQ
AMLHCLRLSGDATA

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
unnamed	AAL08458.1	FecI	Virulence	SRL	Protein	2e-31	44

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
Smal_2301	YP_002028687.1	ECF subfamily RNA polymerase sigma-24 subunit	VFG1049	Protein	1e-31	44