|
Name : SeHA_C0339 (SeHA_C0339) Accession : YP_002044283.1 Strain : Salmonella enterica SL476 Genome accession: NC_011083 Putative virulence/resistance : Virulence Product : fimbrial subunit Function : - COG functional category : - COG ID : - EC number : - Position : 351131 - 351706 bp Length : 576 bp Strand : + Note : identified by match to protein family HMM PF04449 DNA sequence : ATGTATACCGAGTGTACATATATCACTGTAATAAACAACAAAGCAAGGTTATTTTTTATGAACATGAAAACATCTTTTAT TGCCGCAGCTGTGGCATTGGCCACCGTTTATTCTTTTTCTGTTTCTGCGGTTCAGAAGGATATTACCGTCACTGCCAATA TTGACAGTACACTTGAACTGCTGCAGGCCGATGGTTCATCCCTCCCGTCGACTATGAAGCTGGATTTCATGCCGGGTAAG GGCCTGGTCCATAAATCACTCCAGACCCGCCTTTACAGCAACGATCAGACCAAGTCGGTTAATGTAAAACTGTTGAATGC TCCACAACTTATCAACGTCCTGGATCCCACCAAAACCATTGATATGGAAGTGACTCTGGGAGGACGGTCACTGACCACCA CCAATTCTGTACTGGAAGCTAAAACCCTGTTCCCGGACGGAAAAACTGGCGATGCTTCAGCTCTGCTGAACCTGGATATT GGTCAGAAGGCTGGAGCAGCCTTACAAAACCTGCCTGCCGGTGAATACAGCGGATTGGTCAGTCTGGTGATTTCACAGGC TGTCACTGCCGGCTAA Protein sequence : MYTECTYITVINNKARLFFMNMKTSFIAAAVALATVYSFSVSAVQKDITVTANIDSTLELLQADGSSLPSTMKLDFMPGK GLVHKSLQTRLYSNDQTKSVNVKLLNAPQLINVLDPTKTIDMEVTLGGRSLTTTNSVLEAKTLFPDGKTGDASALLNLDI GQKAGAALQNLPAGEYSGLVSLVISQAVTAG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tcfB | NP_454913.1 | putative fimbrial subunit | Not tested | SPI-6 | Protein | 1e-83 | 100 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SeHA_C0339 | YP_002044283.1 | fimbrial subunit | VFG1435 | Protein | 3e-21 | 41 |
