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Name : secD (SeSA_A0466) Accession : YP_002113440.1 Strain : Salmonella enterica CVM19633 Genome accession: NC_011094 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 475177 - 477024 bp Length : 1848 bp Strand : + Note : 'part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side o DNA sequence : GTGTTAAACCGTTATCCTTTGTGGAAGTACATCATGCTGGTCGTCGTGATTATCGTCGGCCTGCTTTACGCACTTCCCAA CCTGTATGGTGAGGATCCGGCTGTTCAAATCACTGGCGTGCGCGGCGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCC AGAAAACGTTACAAGAAGAAAAAATTCCCGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACACC ACCGATACCCAGCTACGCGCCCGTGAAGCGCTGATGAGCGTGCTGGGGGATAAATATGTCGTGGCGCTTAACCTTGCGCC GGCTACGCCGCGCTGGTTGGCGGCTATTCACGCCGATCCGATGAAGCTCGGTCTTGATCTGCGCGGCGGCGTTCACTTCC TGATGGAAGTGGATATGGATACCGCGTTAGGTAAACTCCAGGAACAAAATATCGATAGCCTGCGCAGCGATCTGCGTGAA AAAGGCATTCCTTATACCACCGTTCGTAAAGAAAATAATTATGGGCTGAGCATCACGTTCCGTGACAGCAAAGCGCGTGA TGAGGCGATCGCCTATCTGACGCCGCGTCATCGTGACCTGGTGATTTCCAGCCAGAGCGGCAATCAACTTCGCGCGGTAA TGACCGATGCGCGCCTGAGCGAAGCGCGTGAATACGCCGTTCAGCAGAACATTAATATTCTGCGTAACCGTGTTAACCAA CTGGGCGTCGCGGAGCCTGTCGTACAGCGTCAGGGCGCAGACCGTATTGTGGTTGAGCTGCCGGGTATCCAGGATACCGC TCGTGCGAAAGAAATTCTCGGCGCGACCGCGACGCTGGAATTCCGTCTGGTGAATACCAACGTTGACCAGGCCGCTGCTG CTGCCGGGCGCGTACCGGGTGATTCCGAAGTGAAACAGACCCGCGAAGGTCAGCCGGTGGTATTGTACAAACGCGTGATC CTCACCGGCGACCATATCACCGACTCGACGTCCAGCCAGGATGAATATAACCAACCGCAGGTTAACATCTCGCTGGATAG CGCAGGCGGCAATATCATGTCTAACTTCACTAAGGACAATATCGGCAAACCGATGGCGACCCTGTTTGTGGAGTATAAAG ACAGCGGTAAGAAAGACGCTAACGGTCGCGCTGTACTGGTGAAACAGGAAGAGGTGATTAACATTGCCAACATCCAGTCT CGGCTGGGTAACAGCTTCCGTATTACCGGTATCAGCAACCCGAACGAAGCGCGTCAGCTCTCGTTGTTGCTGCGTGCGGG CGCCCTAATTGCGCCGATTCAGATCGTTGAAGAGCGCACCATTGGCCCGACTTTGGGTATGCAAAATATTAAGCAGGGCC TGGAAGCCTGTCTGGCCGGTCTGGTGGTCTCCATCCTGTTCATGATCTTCTTCTATAAGAAGTTTGGTCTGATTGCGACC AGCGCGTTAGTGGCTAACCTGGTGTTGATTGTCGGTATCATGTCGCTGTTGCCGGGGGCAACGCTCAGTATGCCGGGGAT TGCGGGTATTGTGTTAACCCTTGCGGTGGCGGTCGACGCCAACGTTCTGATTAACGAACGTATCAAAGAAGAGTTGAGTA ATGGCCGCACGGTACAGCAGGCGATAAACGAAGGCTATGCCGGCGCGTTCAGTTCCATCTTCGATGCGAACATCACGACG CTGATTAAAGTCATCATTCTGTATGCTGTCGGTACCGGGGCAATTAAAGGATTCGCGATTACGACCGGTATCGGTGTGGC GACGTCGATGTTTACCGCGATTATCGGTACGCGTGCTATCGTAAACCTGCTATATGGCGGCAAGCGCGTCACTAAGCTGT CAATCTGA Protein sequence : MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVAASEQTLIQVQKTLQEEKIPAKSVALEEGAILARFDT TDTQLRAREALMSVLGDKYVVALNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE KGIPYTTVRKENNYGLSITFRDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTDARLSEAREYAVQQNINILRNRVNQ LGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVI LTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQS RLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIAT SALVANLVLIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITT LIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-120 | 49 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-120 | 49 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-120 | 49 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-120 | 48 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 9e-120 | 48 |
