Gene Information

Name : SSPA1333 (SSPA1333)
Accession : YP_002142172.1
Strain : Salmonella enterica AKU12601
Genome accession: NC_011147
Putative virulence/resistance : Virulence
Product : type III secretion system protein
Function : -
COG functional category : N : Cell motility
COG ID : COG1886
EC number : -
Position : 1508803 - 1509771 bp
Length : 969 bp
Strand : -
Note : similar to Salmonella typhi CT18 type III secretion protein

DNA sequence : 
ATGTTAAGAATAGCGAATGAAGAGCGTCCGTGGATGGAGATGCTTCCAACGCAAGGCGCTACCATTGGTGAGCTGACATT
GAGTATGCAACAATATCCAGTACAGCAAGGGACATTATTTACCATAAATTATCATAATGAGCTGGGTAGGGTGTGGATTG
CAGAACAATGCTGGCAGCGCTGGTGTGAAGGGCTAATTGGCACCGCTAATCGATCGGCTATCGATCCTGAATTGCTATAT
GGAATAGCTGAATGGGGGGTGGCGCCGTTATTGCAAGCCAGTGATGCCACCCTCTGTCAGAACGAACCGCCAACATCCTG
CAGTAATCTACCACATCAGCTAGCGTTGCATATTAAATGGACAGTTGAAGAACATGAGTTCCATAGCATTATTTTTACAT
GGCCAACGGGTTTTTTGCGCAATATAGTCGGAGAGCTTTCTGCTGAGCGACAACAGATTTATCCTGCCCCTCCTGTAGTA
GTCCCTGTATATTTAGGCTGGTGCCAGCTTACGTTAATTGAACTTGAGTCTATCGAAATCGGCATGGGCGTTCGGATTCA
TTGCTTTGGCGACATCAGACTCGGTTTTTTTGCTATTCAACTACCTGGGGGGATCTACGCGAGGGTGTTGCTGACAGAGG
ATAACACGATGAAATTTGATGAATTAGTCCAGGATATCGAAACGCTACTTGCGTCAGGGAGTCCAATGTCAAAGAGTGAC
GGAACATCTTCAGTAGAACTTGAGCAGATACCACAACAGGTGCTCTTTGAGATCGGACGTGCGAGTCTGGAAATTGGACA
ATTACGACAACTTAAAACGGGGGACGTTTTGCCTGTAGGTGGATGTTTTGCGCCAGAGGTGACGATAAGAGTAAATGACC
GTATTATTGGGCAAGGTGAGTTGATTGCCTGTGGCAATGAATTTATGGTGCGTATTACACGTTGGTATCTTTGCAAAAAT
ACAGCGTAA

Protein sequence : 
MLRIANEERPWMEMLPTQGATIGELTLSMQQYPVQQGTLFTINYHNELGRVWIAEQCWQRWCEGLIGTANRSAIDPELLY
GIAEWGVAPLLQASDATLCQNEPPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV
VPVYLGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMKFDELVQDIETLLASGSPMSKSD
GTSSVELEQIPQQVLFEIGRASLEIGQLRQLKTGDVLPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKN
TA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaQ NP_460383.1 type III secretion system protein Virulence SPI-2 Protein 5e-142 99
ssaQ NP_456110.1 putative type III secretion protein Virulence SPI-2 Protein 4e-142 99
ssaQ NP_805089.1 type III secretion system protein Virulence SPI-2 Protein 4e-142 99
ssaQ YP_216426.1 type III secretion system protein Virulence SPI-2 Protein 9e-143 99
ssaQ CAA70540.1 secretion system apparatus Virulence SPI-2 Protein 3e-97 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SSPA1333 YP_002142172.1 type III secretion system protein VFG0518 Protein 2e-142 99