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Name : secD (VFMJ11_2101) Accession : YP_002156795.1 Strain : Genome accession: NC_011184 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2227082 - 2228905 bp Length : 1824 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGGTAGTTTCTGTACTACTTATCTCAGCTCTCTATGCACTTCCAAACCTTTATGGTGAAGATCCAGCAGTTCAAATCAC GGGTAGCCGTGGTACAGAGGTTCAAACCTCTACGCTGGATGTTGTCGCTGAAAATTTAAAGAACAATGACATCGATTATA AGTCAATTGCATTTGAAAATGGCTCTGTTCTTGTTCGATTTAACGATACTGATTCTCAAATCAGTGCTCGTGATATTATT AATGAGTCTTTAGGTAAAGATTACGTTGTTGCATTAAACCTTGCTCCGTTAACTCCTGACTGGTTAACCTCTATTGGTGC TGCACCAATGAAACTTGGTCTTGATTTACGTGGTGGTGTTCACTTCTTAATGGAAGTGGATATGGATGCAGCAATGAGCA AGTTGATTGGTCAGCAAGAAGAATCATTCCGTACTGATCTTCGTGAAGCTAAGATCCGTTACCGCGCAATTCGTGATTCA GGTAAAGATTCCGTAGAAGTGGTTCTTCGCAGCGAAGAGCAATTAGCTGAAGCGAAAAAAGTATTATCTGATGCTCACCG TGATATGACATTTGTTGAATCAGAGTCAAACGGTCAATTTAAGTTAATTGCAACGTTTACTGAGCAGCGTTTACAAGAAA TTCGTAATTACGCTGTTGAACAAAACATCACGATCATTCGTAACCGTGTTAACGAATTAGGTGTTGCTGAACCATTGGTT CAACGTCAAGGCGCAAGCCGTATTGTTGTTGAGTTACCGGGTGTTCAAGATACAGCGCGTGCTAAAGAAATTTTAGGTGC GACAGCGACACTTGAGTTCCGTGAAGTGGATGATAAGGCGGATTTAGCTGCAGCAGCAAGCGGTCGAGCTCCTGCGGGTA GTGAAATCAAAGAAGATCGTAATGGTCGTCCTGTTGTTCTTAAAAAACGTATTATTCTTGGTGGTGCAAGCATTACAGAT GCAAGCTCAAGTGCTGATGAATATGGTCGTCCTCAAGTAAACATCTCGCTAGATAGCGAAGGTGGTAGCAAGATGACTGC GTTCTCTCGTAAAAATATCGGTAAGCTAATGGCGACGGTATTTACAGAGTACAAAGACAGCGGTCGTCGTACACCTGAAG GTCGCGTTATTCTGTCTAAAACGGAAGAAGTGATTAACCAAGCAACGATTCAATCCGCTCTTGGTCGTAGTTTCCGCATT ACCGGTATCGACTCTCAAGCTGAAGCTCATAACCTAGCTCTTCTACTTCGTGCTGGTGCTCTAATTGCGCCTATCTCGAT TGTTGAAGAACGTACGATTGGTCCATCAATGGGTCAACAGAATATCGACATGGGTATTCAAGCGTGTATTTGGGGTATGG TTGCTGTAATGATCTTTACGCTAGTTTATTACCGTGGTTTTGGTCTGGTTGCAAACCTAGCCTTAATGGCAAACTTGGTA TTAATCATTGGTGTTATGTCGATGATCCCAGGTGCAACAATGACGCTTCCAGGTATTGCCGGTATCGTATTAACGGTTGG TATGGCGGTCGATGCTAACGTACTTATTTTCGAGCGTATTCGAGAAGAGTTGCGTGATGGGCGTAATCCACAACAAGCAA TTCACCAAGGTTATGCGAATGCCTTTAGTACGATTGCTGATGCGAACATCACAACCCTGATTACTGCAATTATCTTGTTT GCTGTTGGTACAGGTGCAATTAAAGGTTTCGCTGTTACGTTATCTATCGGTATTTTAACGTCAATGTTTACTGCGATTGT TGGTACTCGTTGTGTGATTAACTTAGTTTACGGCGGTAAGCGCGTAGACAAGCTGTCGATCTAA Protein sequence : MVVSVLLISALYALPNLYGEDPAVQITGSRGTEVQTSTLDVVAENLKNNDIDYKSIAFENGSVLVRFNDTDSQISARDII NESLGKDYVVALNLAPLTPDWLTSIGAAPMKLGLDLRGGVHFLMEVDMDAAMSKLIGQQEESFRTDLREAKIRYRAIRDS GKDSVEVVLRSEEQLAEAKKVLSDAHRDMTFVESESNGQFKLIATFTEQRLQEIRNYAVEQNITIIRNRVNELGVAEPLV QRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAASGRAPAGSEIKEDRNGRPVVLKKRIILGGASITD ASSSADEYGRPQVNISLDSEGGSKMTAFSRKNIGKLMATVFTEYKDSGRRTPEGRVILSKTEEVINQATIQSALGRSFRI TGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMIFTLVYYRGFGLVANLALMANLV LIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADANITTLITAIILF AVGTGAIKGFAVTLSIGILTSMFTAIVGTRCVINLVYGGKRVDKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-110 | 48 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 8e-110 | 48 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 8e-110 | 48 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 8e-110 | 48 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-110 | 48 |
