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Name : clpB (VFMJ11_0578) Accession : YP_002155324.1 Strain : Genome accession: NC_011184 Putative virulence/resistance : Virulence Product : ATP-dependent chaperone ClpB Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 602287 - 604872 bp Length : 2586 bp Strand : + Note : identified by match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR03346 DNA sequence : ATGCGTTTAGATCGATTCACTAGTAAATTTCAAATGGCCATCTCTGATGCTCAATCATTAGCATTAGGTCAAGATCATCA ATATATCGAACCAACCCATTTAATGGTTGCACTGTTAAATCAGGATGGAAGTACGATAAGGCCTTTACTTACTCTTCTAA ATGTAGACGTAACACAATTACGTTCAAAACTAACTGAAATATTAGATAAGACACCAAAGGTAACGGGTATCGGTGGTGAT GTTCAACTTTCATCTAATATGGGGGTTATTTTTAATCTTTGCGATAAAGTCGCTCAGAAACGCAAAGACGCTTATATCTC TTCTGAAATATTCATGCTTGCCGCAATCGAAGATAAAGGGCCTTTGGGTAATTTACTTCGAGAATTAGGATTAACTGAAC CTAAAATATCTAAGTCAATCGATGAGATCCGTGGTGGCGAAAAAGTTAATGATCAAAATGCTGAAGAAAAACGTCAAGCA TTAGAAAAGTTTACTGTTGATTTAACTGAGCGAGCAGAGCAAGGAAAACTAGATCCTGTTATTGGTCGTGATGATGAAAT ACGAAGAACAATTCAGGTATTGCAACGTCGAACTAAAAATAATCCAGTTATAATAGGTCAACCTGGTGTCGGCAAGACAG CTATTGTTGAAGGGTTAGCGCAACGTATTATAAATGGTGAAGTACCTGAAGGTTTAAAAAATAAACGAGTACTTTCTTTA GATATTGGTGCATTGGTAGCTGGTGCTAAATTCCGAGGTGAATTTGAAGAGCGTTTAAAAGCGGTTTTAAATGAGCTAGC GAAAGAAGAAGGTAGTGTCATCCTCTTTATTGATGAAGTACATACAATGGTAGGTGCTGGTAAAGGTGAAGGCTCTATGG ATGCCGGCAACATGCTTAAACCTGCACTCGCACGTGGTGAACTACATTGTGTCGGAGCAACAACTCTTGATGAATATCGT CAGTATATTGAAAAAGATCCAGCATTAGAGCGTCGTTTCCAAAAAGTACTTGTTGACGAACCAACAGTTGAAGATACCGT TGCAATTTTGCGTGGTTTAAAAGAGCGCTATGAAATTCATCATCATGTTGAAATTACTGATCCTGCGATCGTAGCAGCAG CAAGCCTGTCACATCGTTATATTTCAGATCGTCAATTACCGGATAAAGCGATAGATTTAATTGACGAAGCAGCATCAAGC ATTCGTATGGAAATTGATTCAAAACCAGAATCATTAGATAAGCTTGATCGTAAGATAATTCAATTAAAGATAGAGCAGCA AGCACTAGTAAAAGAAAGCGATGATGCGAGCTTAAAGCGTCTTGACTCTTTAAATCTTGAATTAATGCAAAAAGAGCGTG AATACGCAGAGCTTGAAGAAGTGTGGAAAGCTGAAAAAGCGGCTTTATCTGGCACTCAGCATATAAAAACAGAATTAGAA ACAGCTCGAAGTAATATGGAAATTGCACGTCGTGCAGGTGATCTAAATAGAATGTCAGAGCTGCAATATGGACGTATTCC AGAATTAGAGAAACAACTAGATCTTGCCGCTCAAGCTGAAATGCAAGAAATGAGCTTATTAAAAAACAAAGTGACGGATG CAGAGATAGCAGAAGTGCTTTCACGTCAGACGGGCATTCCTGTAAATAAAATGCTTGAAGGTGAAAGAGATAAGCTATTA AAGATGGAAGAGGTATTACATCACCGAGTAATAGGCCAGGCTGAAGCTGTCGAAGCTGTCTCAAATGCAATTCGTCGTAG TCGTGCCGGTCTATCAGATCCAAATCGACCAATCGGTTCATTCTTGTTTTTAGGCCCAACAGGGGTTGGTAAAACGGAAT TATGTAAATCACTCGCTAACTTTATGTTTGATAGTGAAGATGCGATGGTACGTATCGACATGTCAGAGTTTATGGAGAAA CATTCTGTTGCTCGTTTAGTAGGTGCGCCTCCTGGTTATGTTGGTTATGAAGAGGGTGGATACTTAACAGAAGCAGTAAG ACGCAAACCTTATTCAGTTTTACTATTAGATGAAGTAGAAAAAGCACATCCAGATGTATTTAATATTCTACTTCAAGTTC TTGATGATGGTCGTTTAACTGATGGTCAGGGAAGAACGGTTGATTTTAAAAATACCGTTATCATTATGACATCGAACTTA GGTTCAGAAAAAATTCAGCAGCACTTTGGTGAGTTGAATTATGGTGGCATCAAAGAAATAGTAATGGATGTTGTGAGTCA ACATTTTAGACCAGAGTTTTTAAACCGTGTTGATGAAACCGTAGTGTTCCATCCATTGGCACAAGAACACATCAAGAATA TCGCCTCTATTCAATTACAACGCTTAGAAAAACGTTTGAATGAAAAAGATTACCAATTGCAAGTAACAGACGAAGCGTTA AACTTAATTGCTGAGGCAGGTTTTGATCCTGTTTATGGAGCAAGACCATTAAAACGAGCAATTCAGACATATATAGAGAA CCCACTTGCTCAGGATATATTGAGTGGAAAGCTAAGGGTTGGAGAAGTAATTAAGTTGAAAGTTAAAAATGAACAGCTAA TTGCGACTCAAAATGACGACTTTTGA Protein sequence : MRLDRFTSKFQMAISDAQSLALGQDHQYIEPTHLMVALLNQDGSTIRPLLTLLNVDVTQLRSKLTEILDKTPKVTGIGGD VQLSSNMGVIFNLCDKVAQKRKDAYISSEIFMLAAIEDKGPLGNLLRELGLTEPKISKSIDEIRGGEKVNDQNAEEKRQA LEKFTVDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGQPGVGKTAIVEGLAQRIINGEVPEGLKNKRVLSL DIGALVAGAKFRGEFEERLKAVLNELAKEEGSVILFIDEVHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR QYIEKDPALERRFQKVLVDEPTVEDTVAILRGLKERYEIHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASS IRMEIDSKPESLDKLDRKIIQLKIEQQALVKESDDASLKRLDSLNLELMQKEREYAELEEVWKAEKAALSGTQHIKTELE TARSNMEIARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMSLLKNKVTDAEIAEVLSRQTGIPVNKMLEGERDKLL KMEEVLHHRVIGQAEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKSLANFMFDSEDAMVRIDMSEFMEK HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVLLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIIMTSNL GSEKIQQHFGELNYGGIKEIVMDVVSQHFRPEFLNRVDETVVFHPLAQEHIKNIASIQLQRLEKRLNEKDYQLQVTDEAL NLIAEAGFDPVYGARPLKRAIQTYIENPLAQDILSGKLRVGEVIKLKVKNEQLIATQNDDF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 1e-164 | 45 |
| aec27 | YP_851418.1 | ATPase | Not tested | PAI II APEC-O1 | Protein | 2e-101 | 41 |
| aec27 | AAQ96721.1 | Aec27 | Not tested | AGI-1 | Protein | 1e-101 | 41 |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 5e-102 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_002155324.1 | ATP-dependent chaperone ClpB | VFG2084 | Protein | 7e-109 | 43 |
