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Name : secD (VFMJ11_0913) Accession : YP_002155637.1 Strain : Genome accession: NC_011184 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 951606 - 953429 bp Length : 1824 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCAAAGAAAACAACCAATACAACGACTGAACCATTATTCTAAATGGAAATACATCGTACTTATTACGACCCTTGTTAT TCTATTATTGAGTGCGATCCCGACTTGGTATGGTGAAGATGCCGCCGTGCAAATCACCAACAAAGATGGACACATTCCAT CGGTTGTATCACTACAAAACACCTTGACTGAGCAAGGCATTAACGTAAAACGCATCGAACAAAAAGGCGATAAAACCATC GTTATTTTGAAAGATGAAGCACAACAAGTTGCCGCTAAAGATGTGCTTGGTTCAGTGATTGATGAAAGCCAAAAAGGCAC CACACTAGCATTGTCTCTTGCTCCTGCTGCACCAGCTTGGCTGCAAAACATGGGCTTTGAACCAATCAAACTCGGTCTTG ATTTACGTGGCGGTGTGCAATTCTTACTGGATGTGGACGTAAACCAAGTTTACCAAGCACAACGTAACGAATTAGCTGAC TCGCTAAAACAAGAGCTACGTGAAGAGCGCATTCGTTCCGTTCGATTCCAAAAAGAAGGCAGCGATAGCTTAATCGTACG TTTACCATCGGAAGAAGCCAGTCACGCGACTCGTCAGTTTATTCATAAAAACTACCCAACTTGGCAAGTAACTAACGGTG ACGATTTTGATCTTAAGCTAACACTAAAAGAAGATGAAAAAATTGCCGTACGTAACCTAACGGTACAGCAAAACCTTCAA ACCATGCGTAGCCGTATTGAAGAGTTAGGTATTACCGAAGCACTGGTTCAGCGTCAAGGTGAAAACCGCATTCGTATCGA GCTTCCGGGTGTTCAAGATCCAGCAGCGGCGAAAAACGTTATTGGTGCGACAGCAAGTCTTGCTTTCTACGCAGTAAAAG AACAAGGCACTGGCAGCACAATGGTTATTCCTGACCAAAACGGCCAACCAGTTCGCGTAGGCAGAAAACCAGTACTAACA GGTGATCACATTGTTGATGCCCGTGCGAGTCTTGGTGAAATGGGCATGGCTGAAGTAAACATTGTTCTTGATAGTTCAGG CGGCAAAATCATGTCTGAGTTCTCTCGTCACAATGTGGGCAAGCCAATGGCAACCTCATACAACGAATACAGCCGTGATA GCGCAGGTAACACAGAACAAAGTAACCAAATCATCAGTGTTGCGACGATTCAAAGTCAGCTAGGTAGCCGCTTTAGAATC ACAGGTTCTGGCTCGCTTCAAGAATCTCAAGAACTTGCTCTACTTCTACGTGCTGGTTCATTAACTGCGCCTGTAACCAT CGTTGAAGAACGCACTATTGGTCCAACACTAGGTGCTGAAAACATCCAAAACGGTTTTGCTGCTTTAGGTCTTGGTCTTG GTTTAACGCTGCTATTTATGGCGGTGTGGTACCGTCGTTTAGGCTGGGTTGCCAACATTGCACTTATTGGCAACATGGTA ATGCTATTTGGTCTGCTTGCACTTATTCCGGGTGCGGTTCTTACCCTTCCGGGTATTGCAGGTCTTGTACTGACTGTAGG TATGGCGGTTGATACCAACGTACTGATATTTGAACGTATTAAAGATAAACAGAAAGAAGGTCGAACATTGGCTCAAGCCA TTGATAGAGGCTTTAGTAGTGCATTTGGTACCATTTTCGATGCCAACTTCACCACCATGATTACCGCAGTGGTTCTATAC ACCATAGGTAATGGCCCTATCCAAGGCTTTGCATTAACACTGGGCTTAGGTCTATTAACCAGTATGTTCACCGGCATCTT CGCTTCACGTGCCATTATCAATTTAGTTTGGGGTCGTGATTCTCGTCATGATGTTAGGGTTTAA Protein sequence : MQRKQPIQRLNHYSKWKYIVLITTLVILLLSAIPTWYGEDAAVQITNKDGHIPSVVSLQNTLTEQGINVKRIEQKGDKTI VILKDEAQQVAAKDVLGSVIDESQKGTTLALSLAPAAPAWLQNMGFEPIKLGLDLRGGVQFLLDVDVNQVYQAQRNELAD SLKQELREERIRSVRFQKEGSDSLIVRLPSEEASHATRQFIHKNYPTWQVTNGDDFDLKLTLKEDEKIAVRNLTVQQNLQ TMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFYAVKEQGTGSTMVIPDQNGQPVRVGRKPVLT GDHIVDARASLGEMGMAEVNIVLDSSGGKIMSEFSRHNVGKPMATSYNEYSRDSAGNTEQSNQIISVATIQSQLGSRFRI TGSGSLQESQELALLLRAGSLTAPVTIVEERTIGPTLGAENIQNGFAALGLGLGLTLLFMAVWYRRLGWVANIALIGNMV MLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKQKEGRTLAQAIDRGFSSAFGTIFDANFTTMITAVVLY TIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRDSRHDVRV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 8e-82 | 42 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 8e-82 | 42 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 4e-81 | 41 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 4e-81 | 41 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 4e-81 | 41 |
