Gene Information

Name : VFMJ11_A0823 (VFMJ11_A0823)
Accession : YP_002158372.1
Strain :
Genome accession: NC_011186
Putative virulence/resistance : Virulence
Product : type VI secretion protein, family
Function : -
COG functional category : S : Function unknown
COG ID : COG3516
EC number : -
Position : 908062 - 908571 bp
Length : 510 bp
Strand : -
Note : identified by match to protein family HMM PF05591; match to protein family HMM TIGR03358

DNA sequence : 
ATGTCACGTGATGGCTCGGTTGCTCCTAAAGAGCGTATTAATATTCGTTATGTTCCTGCAACAGGGGATGTACAAGAAGA
CGTTGAACTGCCACTAAGTATGATGGTTGTTGGTGACTTTACAGCTCGTACTGATGAGACTCCAATTGAAGACCGTACTC
CTATTAATATCGATAAAGATAACTTTAATGATGTTATGGAAGGTTATTCTCCGAACGTTAAAGTAAATGTTGATAATAAA
CTTAGCGATGAAGAAGGTGCTCAGTTAGGTGTCGATTTAACGTTTAATAGCATGAAAGATTTTTCGCCAGAAGCTATCGC
GAAAAGTGTACCAGAGCTGAATGGTTTACTTGAATTACGTGAAGCGTTAGTTGCTTTAAAAGGTCCATTAGGCAATGTTC
CTGCATTCCGTAAGAAAATTGCAGCAGTACTTCAAGATGAAGAAGCACGACAAAAATTATTAGAAGAGCTAAATATTGGT
TCGGCTAAAGAAGAAGCTAAGGCTGAATAG

Protein sequence : 
MSRDGSVAPKERINIRYVPATGDVQEDVELPLSMMVVGDFTARTDETPIEDRTPINIDKDNFNDVMEGYSPNVKVNVDNK
LSDEEGAQLGVDLTFNSMKDFSPEAIAKSVPELNGLLELREALVALKGPLGNVPAFRKKIAAVLQDEEARQKLLEELNIG
SAKEEAKAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HH0248 NP_859779.1 hypothetical protein Not tested HHGI1 Protein 1e-35 47
aec17 YP_851427.1 hypothetical protein Not tested PAI II APEC-O1 Protein 2e-34 47
aec17 AAQ96711.1 Aec17 Not tested AGI-1 Protein 2e-34 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VFMJ11_A0823 YP_002158372.1 type VI secretion protein, family VFG2092 Protein 2e-49 57
VFMJ11_A0823 YP_002158372.1 type VI secretion protein, family VFG2474 Protein 6e-39 51