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Name : SeD_A1932 (SeD_A1932) Accession : - Strain : Salmonella enterica CT_02021853 Genome accession: NC_011205 Putative virulence/resistance : Virulence Product : - Function : - COG functional category : - COG ID : - EC number : - Position : 1865785 - 1866459 bp Length : 675 bp Strand : - Note : type III secretion apparatus protein, HrpE/YscL family; this gene contains a frame shift which may be the result of sequencing error; identified by match to protein family HMM TIGR02499 DNA sequence : ATGAGTTTTACTTCACTTCCTCTGACGGAAATTAACCATAAGCTACCCGCTCGAAATATTATTGAGTCACAGTGGATAAC ATTACAATTAACTTTATTTGCGCAAGAGCAACAAGCTAAGAGAGTTTCACATGCTATTGTGAGCTCCGCTTACCGTAAGG CTGAAAAAATCATCCGAGACGCCTATCGTTATCAGCGTGAACAGAAAGTTGAGCAGCAACAAGAACTAGCGTGCTTGCGT AAAAATACGCTGGAAAAAATGGAAGTGGAATGGTTGGAACAGCATGTAAAACATTTACAAGAAGATGAAAATCAATTTCG TTCATTGGTCGATCACGCAGCGCATCATATTAAAAATAGTATAGAACAGGTTCTGTTGGCCTGGTTCGACCAACAGTCGG TAGACAGTGTTATGTGCCATCGTCTGGCACGCCAGGCCACGGCTATGGCGGAAGAGGGAGCGCTTTATTTGCGTATTCAT CCTGAAAAAGAGGCATTGATGCGTGAAACTTTTGGCAAGCGGTTTACGTTGATTATCGAGCCTGGTTTCTCTCCCGATCA GGCTGAACTTTCCTCAACACGATATGCCGTTGAGTTTTCACTTTCTCGTCATTTCAACGCGTTACTGAAATGGTTACGTA ATGGTGAAGATAAAAGAGGTAGCGATGAATATTAA Protein sequence : - |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ssaK | NP_460376.1 | type III secretion system apparatus protein | Virulence | SPI-2 | DNA | 0.0 | 99.4 |
| ssaK | CAA70533.1 | secretion system apparatus | Virulence | SPI-2 | DNA | 0.0 | 99.4 |
| STY1709 | NP_456117.1 | putative pathogenicity island protein | Virulence | SPI-2 | DNA | 0.0 | 98.8 |
| t1279 | NP_805082.1 | pathogenicity island protein | Not tested | SPI-2 | DNA | 0.0 | 98.8 |
| ssaK | YP_216419.1 | secretion system apparatus protein SsaK | Virulence | SPI-2 | DNA | 0.0 | 98.5 |
