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Name : Lferr_0490 (Lferr_0490) Accession : YP_002218951.1 Strain : Acidithiobacillus ferrooxidans ATCC 53993 Genome accession: NC_011206 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 458494 - 462582 bp Length : 4089 bp Strand : + Note : TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 3; KEGG: aeh:Mlg_0451 DNA-directed RNA polymerase, DNA sequence : ATGGCCTACTCTTTTACTGAAAAGAAACGGATTCGTAAAGACTTTGGCAAAAGCCAGAGCATTCTTGCTGTGCCATATCT GCTGGCTACGCAGATGGATTCCTACCGGGAGTTTCTCCAGGAGTCGGTACCCCCGGCGGCGCGAAAGGAAACGGGTTTAG AAGCTGTTTTCCGTTCGGTTTTTCCGATGGAAAGTTATTCCGGCAATGCAATGCTGGATTATGTCTCCTACCGCCTGGAA AAACCGGTGTTTGATGTGGTGGAGTGCCGCCAGCGCGGGCTGACCTACTGTGCCGGTTTGCGGGTACGTTTGCGTCTGGC GGTTATGGAAAAAGACGACACCACTGGCGCCAAAAGAGTCAAAGACGTGAAGGAGCAGGACGTCTATATGGGCGAACTGC CTCTGATGACGGAGCACGGTTCCTTCGTGATTAACGGCACGGAGCGCGTCATCGTCTCGCAGTTGCATCGTTCGCCGGGC GTTTTCTTCGATCATGATCGCGGCAAGACCCATTCTTCGGGAAAGCTCCTCTTTAATGCGCGCATCATTCCTTACCGGGG TTCTTGGCTGGATTTCGAGTTTGACCCCAAGGATCACGTTTATGCGCGCATCGATCGCCGTCGTAAGTTGCCGGCGACGA CGTTGCTGCGTGCGCTGGGCTACAGCACCCAGGACATTCTTGAGATGTTTTTTGATATGGAGACCTTTCGCCTGATCGAC GGCGATCTGCGCTATGTACTGATCCCGCAGCGTCTACAGGGCGAAGTGGCGGCGTTTGATATCGTCAGTCCGGAAACTGG CGACGTGCTGGTACAGGCCGGTAAGCGAATTACGGTGCGCCAAACCAAGGCGCTCTCCGAGGTTCAGGGTCTGCATGAGA TTCCTGTGCCGGATAGCTTCCTTCTGGGCAAGGTCGTCGCCCGGGATATCGTTCATCCCGAAACCGGCGAAGTGGTGGTA CAGGCCAATGAGCCCGTCAGCGGTGAGCTTCTGGACGCTCTGCGAAAAATGCCGTCACTCACACTGCATACGCTCTATCT CAACGAACTGGATCGTGGGCCTTATATTTCAGAAACGTTGCGTATCGACACGTCACGTGATGCTCACGACGCCCAGATGG AAATCTATCGGCTGATGCGTCCGGGTGAACCGCCGACGAAGGATGCGGCGCAAAACCTGTTCCAGGGACTGTTCTTCAGT CCCGATCGCTACGACCTGTCGGCCGTAGGCCGCATGAAGTTCAATCGTCGGGTGGGGCGCGATGAGATCACCGGTCCTGG CGTGCTGAATGATGCGGATATCATCGCGGTGCTCAAGGTACTGGTCGCCCTGCGTAACGGTGTGGGGGAGATCGACGATA TCGATCATCTCGGTAATCGGCGCGTGCGCTCGGTTGGTGAGTTGATGGAAAACCAATTTCGGCTCGGTCTGGTGCGTGTG GAAAGGGCCGTCAAGGACCGTCTTGCCCTCGCCGAGAGCGAGGGCCTCACGCCCCAGGATCTGATCAATGCAAAACCCAT TGCGGCAGTGGTCAATGAGTTCTTTGGCTCCAGCCAGCTTTCCCAGTTCATGGATCAGACCAACCCGCTTTCCGAGGTCA CCCACAAGCGGCGTGTCTCGGCTTTGGGGCCGGGCGGCCTGACCCGGGAGCGTGCGGGTTTCGAGGTGCGTGACGTACAT CCGACGCACTACGGCCGGATCTGCCCCATTGAAACGCCGGAAGGCCCGAATATCGGACTGATCAACAGCTTGTCGTGCTA CGCGCGGACGAATTCCTACGGGTTTCTCGAAACGCCGTATCGACGCGTTGTCGATCGCCGCACCACCGATGAGGTGGAAT ACCTGTCGGCTATTGAAGAAGGCAATTATATGATTGCCCAGGCGAACTCGACGGTGGACGAGCACGGCGTGCTCACCGAC GAACTGGTGTCCTGCCGTTTCAAGAACGAGTTCACTCTGGCAAACCCGGATCAGGTTCAGTTCATGGATATCTCGCCGCG GCAGATCGTCTCGGTGGCGGCGAGTATGATCCCGTTCCTGGAGCATGATGACGCCAACCGCGCCCTCATGGGTTCCAACA TGCAACGCCAGGCGGTGCCGACGGTGCGTTCCGATGCACCGATGGTGGGTACGGGCATGGAACGGGTGGTCGCCATCGAT TCTGGTGCGGCCGTCGTCGCCCGGCGTGGTGGCGTGGTGGATATCGTTGATGGTGCCCGTATCGTCATTCGTGTCAGTGA TGAGGAAACCCTGCCGGAAGAGCCCGGCGTGGATATCTACAACCTCGTCAAGTACGCGCGTTCCAACCAGAACACCACCC TGAATCAGCGCCCCGTGGTCAAGGTCGGCGATGTGGTGAGTCGTGGTGACGTACTGGCCGACGGGCCGAGCACGGAGATG GGTGAACTGGCGCTCGGCCAGAACATTCTGGTCGCCTTTATGCCCTGGAATGGCTATAACTTCGAGGATTCCATCCTGAT CTCGGAACGGGTCGTGGCGGAAGACCGCTATACCACTATTCATATCGAGGAGTTTTCGGTTTTCGCCCGCGACACCAAAC TGGGGCCGGAAGAAATCACCCGGGATATCCCCAACGTCGCCGAAGGTGCCTTACGTCATCTGGATGAGTCGGGTATTGTC GTAATCGGTGCGGAACTGGCGCCGGGTGACATTCTTGTCGGCAAGGTCACGCCCAAGGGCGAGACGCAGTTGACGCCGGA AGAGAAGCTTCTGCGGGCAATCTTCGGTGAAAAGGCCTCCGACGTGAAAGATAACTCCATGCGAATGCCTGCCGGTATGT ATGGCACGGTGATCGATGTGCAGGTCTTTACCCGCGATGGTATCGAGAAGGATGCCCGTGCCAAGTCCATTGAAGAACAT GAACTCGCACGGATCCGTAAGGATCTTAATGATCAGTATCGCATCGTCGAGGAAGACAGCTATCAGCGGATTGAGCGTCA GCTGATCGGCAAGGTTGCCGAGGGCGGTCCCAACGGCCTGGCGGCCGGAAACAAGGTGACAAAGGCTTATCTGAAAGACT TACCGCGTGCTAAATGGTTTGAGATCCGTTTGCGTACGGAAGAGAGTAACGAGTCCCTGGAACAGATCCGTGCTCAGCTC GAGGAACAACGCCAGCGTCTCGATGCGGTACTCGAAGAAAAGCGGCGCAAGCTGACCCAGGGGGATGATCTGAGTCCGGG CGTTCTGAAGATGGTTAAAGTGCATGTGGCCATAAAAAGGCACTTGCAGCCCGGTGATAAAATGGCAGGCCGCCATGGGA ATAAGGGCGTGGTCTCCAAGATCGTGCCAGTGGAAGACATGCCCTATCTTGCCGATGGTACGGCGGTGGATATCGTGCTC AATCCTCTGGGTGTGCCTTCCCGTATGAACGTGGGACAGATCCTCGAAACCCATCTGGGGTGGGCTGCCAAGGGGCTGGG CAAGAAGATCGGCGCGATGCTGGACAGTGAGGTGGCAATGGCAGAAATGCGCGCTTTCCTGGCGGAAATCTACAACCGGT CTGGCAAGAAAGAGGATCTCGACAGCCTGACAGACCAGGAAATTCGCGAGCTTTCCGCGAATCTTCGTGGTGGTGTGCCC ATGGCGACCCCGGTCTTTGATGGCGCCTCCGAAGAAGAGATCGGCGACATGCTGGAGCTGGCTGGTTTGCCGCGCAGCGG CCAGGTCACGCTGTATGACGGACGGAGCGGTGATGCTTTTGACCGCCCGGTGACGGTGGGTTATCTCTACATGCTCAAGC TCCATCACCTGGTGGATGACAAGATGCATGCCCGTTCCACAGGTCCGTACAGTCTGGTTACCCAACAGCCTTTAGGTGGT AAGGCGCAGTTTGGCGGCCAGCGCTTCGGTGAAATGGAGGTGTGGGCGTTGGAAGCCTATGGCGCGGCATACACCCTGCA GGAAATGCTCACCGTGAAGTCGGATGACGTAAGCGGGCGCAGCAAGATGTATGAGTCCATCGTCAAGGGTGATTTCCGCA TGGATGCCGGAATGCCGGAGTCTTTCAACGTGTTGTTGAAAGAACTGCGTTCTTTGGGTATCGATATTGAACTGGAACAG TCCAAGTAA Protein sequence : MAYSFTEKKRIRKDFGKSQSILAVPYLLATQMDSYREFLQESVPPAARKETGLEAVFRSVFPMESYSGNAMLDYVSYRLE KPVFDVVECRQRGLTYCAGLRVRLRLAVMEKDDTTGAKRVKDVKEQDVYMGELPLMTEHGSFVINGTERVIVSQLHRSPG VFFDHDRGKTHSSGKLLFNARIIPYRGSWLDFEFDPKDHVYARIDRRRKLPATTLLRALGYSTQDILEMFFDMETFRLID GDLRYVLIPQRLQGEVAAFDIVSPETGDVLVQAGKRITVRQTKALSEVQGLHEIPVPDSFLLGKVVARDIVHPETGEVVV QANEPVSGELLDALRKMPSLTLHTLYLNELDRGPYISETLRIDTSRDAHDAQMEIYRLMRPGEPPTKDAAQNLFQGLFFS PDRYDLSAVGRMKFNRRVGRDEITGPGVLNDADIIAVLKVLVALRNGVGEIDDIDHLGNRRVRSVGELMENQFRLGLVRV ERAVKDRLALAESEGLTPQDLINAKPIAAVVNEFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVH PTHYGRICPIETPEGPNIGLINSLSCYARTNSYGFLETPYRRVVDRRTTDEVEYLSAIEEGNYMIAQANSTVDEHGVLTD ELVSCRFKNEFTLANPDQVQFMDISPRQIVSVAASMIPFLEHDDANRALMGSNMQRQAVPTVRSDAPMVGTGMERVVAID SGAAVVARRGGVVDIVDGARIVIRVSDEETLPEEPGVDIYNLVKYARSNQNTTLNQRPVVKVGDVVSRGDVLADGPSTEM GELALGQNILVAFMPWNGYNFEDSILISERVVAEDRYTTIHIEEFSVFARDTKLGPEEITRDIPNVAEGALRHLDESGIV VIGAELAPGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDNSMRMPAGMYGTVIDVQVFTRDGIEKDARAKSIEEH ELARIRKDLNDQYRIVEEDSYQRIERQLIGKVAEGGPNGLAAGNKVTKAYLKDLPRAKWFEIRLRTEESNESLEQIRAQL EEQRQRLDAVLEEKRRKLTQGDDLSPGVLKMVKVHVAIKRHLQPGDKMAGRHGNKGVVSKIVPVEDMPYLADGTAVDIVL NPLGVPSRMNVGQILETHLGWAAKGLGKKIGAMLDSEVAMAEMRAFLAEIYNRSGKKEDLDSLTDQEIRELSANLRGGVP MATPVFDGASEEEIGDMLELAGLPRSGQVTLYDGRSGDAFDRPVTVGYLYMLKLHHLVDDKMHARSTGPYSLVTQQPLGG KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGRSKMYESIVKGDFRMDAGMPESFNVLLKELRSLGIDIELEQ SK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 66 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 69 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 68 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 68 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 67 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 67 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 67 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 67 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 67 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 67 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 66 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 66 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 66 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 66 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 66 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 66 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 66 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 66 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | AM180355.1.gene120.p | Protein | 0.0 | 47 |
| Lferr_0490 | YP_002218951.1 | DNA-directed RNA polymerase subunit beta | NC_012469.1.7686402. | Protein | 6e-177 | 43 |
