|
Name : secD (VSAL_I2433) Accession : YP_002263787.1 Strain : Genome accession: NC_011312 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2604648 - 2606504 bp Length : 1857 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAACCGTTTCCCTTTATGGAAGTATTTGATGGTAGTTTCTGTACTACTTATCGCCGCTCTGTATGCGCTTCCAAA CCTTTATGGTGAAGATCCAGCCGTTCAAATCACGGGTAGTCGTGGTGCTGAGGTTCAAACCTCTACGCTGGATGTCGTTG CTGAAAATTTAAAAAACAATAACATCGCTTATAAGTCTATTGCATTCGAAAATGGCAGTGTTCTTGTTCGCTTTAAAGAT ACTGACTCTCAGATCAGTGCCAGAGATATTATTAGCCAGTCATTAGGTAAATATTACGTAGTGGCGTTAAACCTTGCTGC ACTAACGCCTGATTGGTTAACGTCCATTGGTGCTAAACCAATGAAGTTAGGCTTAGATTTACGTGGTGGTGTTCACTTCT TAATGGAAGTGGATATGGATGCCGCAATGAGCAAACTTGTCGGCCAGCAAGAAGAATCTTTCCGTACTGATTTACGAGAA GCGAAGATCCGTTATCGTGCTATTCGCAGTTCAGGTAAAGAAAGTGTTGAAGTTGTTCTTCGTAATGCAGAGCAACTAGA AGAAGCCAAGAATGTATTATCAGATGCGCATCGTGATATGACGTTTGTTGATTCGGAATCAAATGGCCAATTTAAATTAA TAGCAAGTTTTACTGATCAGCGTTTACAAGAGATCCGTAATTATGCGGTTGAGCAAAATATCACGATTATCCGTAATCGT GTTAATGAACTTGGTGTTGCTGAACCATTAGTTCAACGTCAAGGTGCAAGCCGAATTGTGGTTGAATTACCCGGTGTTCA AGACACCGCTCGTGCAAAAGAAATTTTAGGTGCAACGGCGACACTTGAGTTCCGCGAAGTGGATGACAAAGCGGATTTGT CGGCTGCAGCTAATGGCCGAGCACCGGCAGGAAGCGAAATAAAAGAAGATCGAAATGGTCGTCCTGTTGTTCTTAAGAAA CGTATTATTCTTGGTGGAGCGAGCATTACAGATGCAAGTTCAAGTGCTGATGAATATGGTCGTCCTCAAGTTAACATCTC ACTAGACAGTGAAGGTGGCAGTAAGATGACGGCGTTCTCTCGTAAAAATATCGGTAAGCTAATGGCAACCGTATTTACAG AGTATAAAGACAGCGGTCGTCGCACGCCTGAAGGTCGCGTTATTCTTGCTAAGACAGAAGAAGTGATTAACCAAGCAACG ATTCAATCAGCTCTTGGTCGTAGTTTCCGTATTACGGGTATTGATTCTCAAGCTGAAGCTCATAACTTAGCACTTCTTCT TCGTGCTGGTGCACTAATTGCGCCAATCTCGATTGTTGAAGAACGCACGATTGGTCCATCAATGGGTCAGCAGAATATTG ATATGGGTGTTCAAGCGTGTATTTGGGGTATGGTAGCCGTAATGCTATTTACTCTAATTTATTATCGTGGCTTTGGTTTG GTTGCTAACTTAGCGCTTGCCGCTAACTTGGTACTTATCATTGGTGTTATGTCGATGATCCCTGGAGCGACAATGACGCT TCCTGGTATTGCCGGTATTGTATTAACTGTTGGTATGGCCGTGGATGCAAACGTACTTATCTTTGAACGTATTCGTGAAG AGTTAAGAGATGGACGTAATCCGCAACAAGCGATTCATCAAGGTTATGCAAACGCATTCAGTACGATTGCTGATGCAAAC ATCACGACATTAATTACAGCGATTATCTTATTTGCTGTAGGTACTGGTGCGATCAAAGGCTTTGCAGTAACGCTATCAAT TGGTATTTTGACTTCAATGTTTACGGCTATCGTCGGTACTCGTTGTGTTATTAACTTAGTTTACGGCGGTAAGCGCGTAG ACAAACTGTCGATCTAA Protein sequence : MLNRFPLWKYLMVVSVLLIAALYALPNLYGEDPAVQITGSRGAEVQTSTLDVVAENLKNNNIAYKSIAFENGSVLVRFKD TDSQISARDIISQSLGKYYVVALNLAALTPDWLTSIGAKPMKLGLDLRGGVHFLMEVDMDAAMSKLVGQQEESFRTDLRE AKIRYRAIRSSGKESVEVVLRNAEQLEEAKNVLSDAHRDMTFVDSESNGQFKLIASFTDQRLQEIRNYAVEQNITIIRNR VNELGVAEPLVQRQGASRIVVELPGVQDTARAKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKEDRNGRPVVLKK RIILGGASITDASSSADEYGRPQVNISLDSEGGSKMTAFSRKNIGKLMATVFTEYKDSGRRTPEGRVILAKTEEVINQAT IQSALGRSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGVQACIWGMVAVMLFTLIYYRGFGL VANLALAANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADAN ITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCVINLVYGGKRVDKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 1e-117 | 49 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 1e-117 | 49 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-117 | 49 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 4e-118 | 49 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 1e-117 | 49 |
