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Name : secD (RC1_1042) Accession : YP_002297278.1 Strain : Rhodospirillum centenum SW Genome accession: NC_011420 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 1103672 - 1105240 bp Length : 1569 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGATCTATTTTGCCAAGTGGAAGGTCGTCCTCGTCGTGGGCGTCTGCCTGCTGTCGCTGCTGTACGCGGCGCCGAACGT GCTGGGGCGCGCCAAGGTCGATTCCTGGGCGTCCAGCCTTCCAGGGTGGCTCCCGACGAAGACCGTCAACCTCGGACTTG ACCTCCAGGGCGGGTCCCACCTGCTTCTGGAGGTCAAGGTCGACGTGGTCGTTCAGGAGCGGCTGAACGCCTTGCAGGAC GGGGCGCGCGCTGCGCTGCGTGATGCCAGGATCGGCTATACCGACCTGGGCGTCGTCGGCAACGGCATCGCCTTCACGCT GCGCGACCCGGCGGACCTGGAGACTGCCCGCTCCGCCGTGCGCAACGTGGAGAGCGATCTTTCCATCCGGACCGATGAGG GCAACCGGATCGTCGCATCCCTGACGGATTCCACGGTCCAGGGGTTGCGCCGGGCGGCGGTGGAGCAGTCCATCGAGATC GTCCGTCGCCGTATCGACGAGACCGGCACGCGCGAGCCGACCATCCAGCGGCAGGGCGAGGACCGCATCCTTGTCCAGCT TCCGGGTGTGGACGACCCCGAGCGTGTCAAGCGCCTGCTGGGCCAGACGGCGAAGCTCACCTTCCGGCTGGTGGATGACG ACATTTCTCCGGCCGATGCCCAGGCCGGCCGCATCCCGCCCGGTTCCGAACTGCTGCCCAGCCGCGACGGCGGTGTCGAG GTCGTGCGCAAGCGCGTCATGGTGGACGGTTCGACCCTGGTCGACTCGCAGCCCAGCTTCCAGGATGGCCAGCCCGTCGT CAGCTTCCGTTTCGACAGCCTGGGGGCCCGCCGTTTCGGCGAGGCGACCAGCGCCAATGTGGAGAAGCGGTTCGCCATCG TTCTGGACAACCAGGTTATCTCCGCCCCCCGCATCCAGGAGCCGATCCTGGGTGGCAGCGGCATCATCCGTGGCAGCTTC ACCGTGGAGACGGCCAACGACCTGTCCCTGCTGCTGCGCGCCGGTGCCCTCCCGGCACCGCTGACGGTGCTGGAGGAGCG GACGGTCGGTCCGGGCCTGGGCGCCGATTCCATCGAAGCCGGGCGGATCGCCAGCATCGCCGGTCTGGTGATGGTCGTCG CCTTCATGGCGCTCTGCTACGGCCTGTTCGGCCTGTTCGCCAATCTGGCGCTGGTCTTCAACATCGCCCTGATCTTCGCG GCGCTGTCCATCCTTCAGGCGACGCTGACTCTCCCCGGAATCGCCGGCATCGTGCTGACCATCGGCATGGCGGTGGACGC CAACGTGCTGATCTTCGAGCGCATCCGTGAGGAGCTGCGGTTCGGGCGCACGCCCATCGCCGCCATCGACGCGGGCTACA ACCGCGCCCTGACGACCATCATCGACAGCAATCTGACGACGCTCATCGCAGCACTGTTGTTGTTCATGTTCGGATCGGGG CCGGTGAAGGGATTCGCCGTGACACTGTCCATCGGCATTCTCGCCTCCATGTTCACGGCGATCATGGTGACGCGCCTGAT GGTGGTGGTGTGGCTGCGGCGGACCCGGCCGAAGACCGTCCCCATCTGA Protein sequence : MIYFAKWKVVLVVGVCLLSLLYAAPNVLGRAKVDSWASSLPGWLPTKTVNLGLDLQGGSHLLLEVKVDVVVQERLNALQD GARAALRDARIGYTDLGVVGNGIAFTLRDPADLETARSAVRNVESDLSIRTDEGNRIVASLTDSTVQGLRRAAVEQSIEI VRRRIDETGTREPTIQRQGEDRILVQLPGVDDPERVKRLLGQTAKLTFRLVDDDISPADAQAGRIPPGSELLPSRDGGVE VVRKRVMVDGSTLVDSQPSFQDGQPVVSFRFDSLGARRFGEATSANVEKRFAIVLDNQVISAPRIQEPILGGSGIIRGSF TVETANDLSLLLRAGALPAPLTVLEERTVGPGLGADSIEAGRIASIAGLVMVVAFMALCYGLFGLFANLALVFNIALIFA ALSILQATLTLPGIAGIVLTIGMAVDANVLIFERIREELRFGRTPIAAIDAGYNRALTTIIDSNLTTLIAALLLFMFGSG PVKGFAVTLSIGILASMFTAIMVTRLMVVVWLRRTRPKTVPI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 9e-70 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 9e-70 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 9e-70 | 43 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-70 | 43 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 5e-70 | 42 |
