|
Name : glcD (RC1_2152) Accession : YP_002298352.1 Strain : Rhodospirillum centenum SW Genome accession: NC_011420 Putative virulence/resistance : Unknown Product : glycolate oxidase subunit GlcD Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 2217645 - 2219129 bp Length : 1485 bp Strand : - Note : identified by match to protein family HMM PF00072 DNA sequence : ATGCGCATGCCCGATCCGGACGACAGGGTCTTTCGCAACCGCGACGCCCTGCTGGCGCGGCTGCGAAAAGCCGTGCCCGG CGGTGTCATCGCCGAGGAGGATGCCCGCCGTCCCTATGAGACGGACGGGCTGACCGCCTACCGCCAGCTTCCGCTGGTCG TGGTGCTGCCGTCCTCCACGGCGGAGGTGGCGGAAACCCTGCGCATCTGCCGCGGGATGGGGGTCAAGGTGGTGCCGCGC GGGGCCGGCACGGGCCTCTCCGGCGGCGCCCTGCCGCTGGCCGACGGGGTGCTGCTGGGGCTGTCCAAGCTCAACCGCAT CCTCGACATCGACTACGACAACCGCACCGTCACGGTGCAGCCCGGGGTCACCAACCTGGGCATCACGCACGCGGTGCAGC ACCGCGGCTTCTACTACGCCCCCGATCCCAGCTCGCAGATCGCCTGCACCATCGGCGGCAACGTCGCGGAGAATTCCGGC GGCGTCCACTGCCTGAAGTACGGGGTGACGACGAACAACGTCCTGGGCGTGGAGTTCGTCACCATGGAGGGGGAGGTGGT CCGCCTCGGCGGCAAGCACCTGGACCCCGAGGGCTACGACCTGCTGGGCGTGCTGAACGGGTCGGAGGGGCTGCTGGGCG TGGTCACGGAGGTGACCGTCCGCATCCTCCAGAAGCCGGAGACGGCGCGGGCCGTGCTGCTGGGCTTTCCGTCGGTGGAG GCGGGCGGGGCGGCCGTGGCCGCCGTGATCGCCGCCGGCATCATTCCCGGCGGCATGGAGATGATGGACCGCCCCGCCCT GAACGCGGCGGAGGACTTCGTCGGCGCGGGCTACCCGCGCGATGCCGAATCGCTGCTGATCGTGGAGCTGGACGGGCCGG CGGCCGAGGTCGATCACCTGATCGAGCGGGTGGAGGCCATCGCGCGGGAGAACGGCGCCTTCTATTCCCGCGTCTCCCGC TCGGAGGAGGAGCGGGCGGCCTTCTGGTCCGGGCGCAAGAACGCCTTCCCCGCCGTGGGCCGCATCGCCGCCGACTACAT GTGCATGGATGGCACCATCCCCCGCCGGGCCCTGCCGCAGGTGCTGCGCCGGATGACGGAGATGCAGGCCGAGTTCGGCC TGCGGGTCGCCAACGTCTTCCATGCCGGCGACGGCAACCTGCACCCGCTGATCCTGTTCGACGCCAACCGGCCGGGCGAG CTGGAGCGGGCGGAGGCGTTCGGCGCCGCCATCCTGAAACTGTGCGTGGAGGTCGGCGGCGTGCTGACCGGGGAGCACGG CGTGGGCGTCGAGAAGCGAGACCTGATGACCGTGCAGTTCGCCGAGGCTGACCTGGAGCAGCAGCAGCGCCTGAAATGCG CCTTCGACCCGGACGGGCTGCTGAACCCCGGCAAGGTGTTCCCGCTGCTGCACCGCTGCGCCGAACTGGGCCGGCTGCAC GTTCCGCGCGGGCAGCTTCCCTTCCCGGACCTGCCGCGGTTCTGA Protein sequence : MRMPDPDDRVFRNRDALLARLRKAVPGGVIAEEDARRPYETDGLTAYRQLPLVVVLPSSTAEVAETLRICRGMGVKVVPR GAGTGLSGGALPLADGVLLGLSKLNRILDIDYDNRTVTVQPGVTNLGITHAVQHRGFYYAPDPSSQIACTIGGNVAENSG GVHCLKYGVTTNNVLGVEFVTMEGEVVRLGGKHLDPEGYDLLGVLNGSEGLLGVVTEVTVRILQKPETARAVLLGFPSVE AGGAAVAAVIAAGIIPGGMEMMDRPALNAAEDFVGAGYPRDAESLLIVELDGPAAEVDHLIERVEAIARENGAFYSRVSR SEEERAAFWSGRKNAFPAVGRIAADYMCMDGTIPRRALPQVLRRMTEMQAEFGLRVANVFHAGDGNLHPLILFDANRPGE LERAEAFGAAILKLCVEVGGVLTGEHGVGVEKRDLMTVQFAEADLEQQQRLKCAFDPDGLLNPGKVFPLLHRCAELGRLH VPRGQLPFPDLPRF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 1e-129 | 58 |
