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Name : swp_2003 (swp_2003) Accession : YP_002311346.1 Strain : Shewanella piezotolerans WP3 Genome accession: NC_011566 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 2078069 - 2082100 bp Length : 4032 bp Strand : + Note : - DNA sequence : ATGGTTTACTCCTATTCTGAAAAGAAGCGTATTCGCAAAGACTTCGGTAAACGCCAGAAAGTTCTGGATATCCCTTACCT ATTGTCAATCCAGTTGGACTCTTTTAAGAAGTTCACCGATCAAGATCCTACAGGTGAGCGTGGTTTTGAAGCCGCTTTCC GTAGCGTTTTTCCCATCAAGAGCTTTTCTGGTAATTCGGAGCTGCAATACGTCAGCTACAAACTAGGCGAGCCAGTTTTT GATGTGAAAGAGTGTCAAATCCGCGGTATTACATATTCTGCACCACTGCGCGTTAAATTGCGTATGGTTCTTTATGACCG TGAAGCTGCACCTGGCACTGTAAAAGACATTAAAGAACAAGAAGTTTATATGGGGGATATCCCTCTTATGACTGACAACG GTACCTTTGTAATTAATGGTACTGAGCGTGTTATCGTATCTCAGCTACACCGTAGCCCGGGCGTATTCTTCGATCATGAC CGTGGTAAAACCCACTCTTCAGGTAAGGTGCTGTATAACGCACGTATTATTCCTTACCGTGGTTCTTGGTTAGACTTTGA ATTCGATCCTAAAGATGCATTGTTTGTTCGTATTGACCGCCGTCGTAAGCTGGCTGCATCGATCATTCTTCGCGCATTAG ATTATTCGACTCAAGACATTCTTGACCTGTTCTTCGATCGCGTAAACTTTAAGATCAAGCAAGATTCACTAGTCATGGAT CTAGTTGCTGATCGTCTACGTGGCGAAACGGCAAGTTACGATATTAAAGATGCTGAAGGCACTGTTCTTGTCGAAAAGGG ACGTCGTATTACTGCGCGTCATATTCGTCAGCTTGAAAAGACTAATACTACTGAACTTGAAGTACCAGTTGAGTACATTG CTGGTAAGATTTCTGGTCAAGATTACATCGATCCAGATACTGGCGAAGTATTAGTTTCTGCTAACGCAGAAATCGGCCTA GAAGATCTTGCTAAGCTTTCTTTGGCAGGCATCAAGGAAGTAAGCACACTGTATATCAACGAACTTGATAACGGCGCTTA CATCTCTGACACGCTACGTATTGATTCTACAACTAACCGCTTAGAAGCGCTTGTTGAAATCTACCGTATGATGCGTCCAG GCGAGCCACCAACCAAAGATGCTGCAGAAGCGTTATTTAATAACCTTTTCTTCAGCGAAGAACGCTATGACCTGTCTAAA GTGGGTCGTATGAAGTTCAACCGTCGTCTAAGCATTGATGACGACGAAGGTACGGGTATCCTTTCTAAAGAAGATATCGT TGCCGTGATGAAGAACATCATCGCCATCCGTAATGGTTTGGACGAAGTTGATGATATCGATCACCTTGGTAACCGTCGTA TCCGTAGTGTTGGCGAAATGGCTGAAAACCAGTTCCGTGTTGGTCTAGTTCGTGTAGAACGTGCCGTACGTGAGCGTTTA AGCCTTGGCGATCTCAATGAGCTAATGCCTCAGGATTTGATCAACGCTAAGCCAATCTCTGCAGCTGTTAAAGAATTCTT TGGCTCTTCACAGCTTTCGCAATTCATGGATCAAAACAACCCGCTTTCAGAAGTGACGCATAAGCGTCGTATTTCTGCGC TTGGCCCAGGTGGTTTGACTCGTGAACGTGCTGGTTTTGAGGTTCGAGATGTACATCCGACTCACTATGGTCGTCTATGT CCAATCGAAACTCCTGAAGGTCCAAACATTGGTTTGATCAACTCGTTGTCAACCTTTGCGCGTACTAACAACTATGGTTT CCTTGAAACACCTTACCGTAAGGTTATTGATGGTGTGGTTACTGATGAGGTCGATTACCTTTCAGCAATCGAAGAAGGTC GCTATGTTATCGCACAGGCTATCGTTGAGTTAGACGAAAACAACCGCATGATGGATGAGCTTATTGCTTGTCGTCATAAA GGTGATTCTACCTTTATGGGCGCAGCAGACATCCAATACATGGACGTTTCGCCACAACAGATTATTTCTGTGGCGGCATC GCTCATTCCGTTCCTAGAACACGATGATGCGAACCGTGCATTGATGGGTGCAAACATGCAACGTCAAGCCGTACCTACAC TTAAGGCTGATAAGCCACTAGTTGGTACCGGTATTGAGCGTACGCTTGCTGTTGACTCTGGTGTTGTTGTTGCTGCGAAG CGTGGTGGTTACGTTGATTATGTTGACGCAAGCCGCATCGTAGTGAAAGTTGACGAAGCTGAGTTGACTCCAGGCGAAGC GGGCATTGACATCTACAACTTGACTAAATACACGCGTTCTAACCAGAACACATGTATTAACCAACGTCCTTGTTGTAGTG TTGGCGATCCAGTTGTTCGTGGTGACGTACTCGCCGATGGCCCATCTACCGATTTAGGTGATTTGGCACTTGGTCAGAAC ATGCGTATCGCGTTCATGCCTTGGAACGGTTACAACTTTGAGGATTCAATCCTTATCTCTGAGCGTGTAGCTCAGGAAGA CCGCTTCACGACTATCCACATTCAGGAGCTTTCTTGTATCGCTCGTGATACTAAGTTGGGTAGCGAAGAGATCACTGCTG ATATTCCAAACGTTGGTGAGTCTGCGCTTTCTAAGCTAGATGAATCAGGTATCGTTTATATCGGTGCAGAAGTTAAGGGT GGCGACATCCTAGTAGGTAAAGTGACACCTAAGGGTGAAACACAGCTTACTCCAGAGGAAAAACTTCTCCGTGCAATCTT CGGCGAAAAAGCATCTGACGTTAAAGATAGCTCACTACGTGTACCTAACTCTGTTAAAGGTACTATCATCGACGTACAAG TATTTACTCGTGACGGCGTTGATAAAGATAAGCGTGCTGTTGAAATCGAAGAGATGCATATCGCTCAGGCGAAGAAGGAT TTGACTGAAGAGTTCCAAATTCTTGAAGATGGTGTTCTTGGTCGTGCTCGCAACCTACTACTAGGTGCTGGTTTCGATGA AGCCCAACTTGATGCAATTCCACGCTCGCAGTTGTTGATGCAAACTATCGATGACGAAGCGAAGCAAACTGAGCTAGAGC AGTTAGCTGAGCAAGCGGAAGAGCTAAAAGCAGATTTCGATAAGAAGTTCGAAGTTAAGCGTCGTAAGATCACTCAAGGT GATGATTTAGCACCTGGCGTACTGAAGATTGTTAAGGTTTACTTAGCAGTTAAACGTACTATTCAGCCTGGTGATAAGAT GGCGGGTCGTCATGGTAACAAGGGTGTAATCTCTAAGATTTGTCCTGTTGAAGACATGCCTTACGATGAAAAAGGTAACC CAGTGGATATCGTATTGAACCCACTAGGTGTACCGTCACGTATGAACATCGGTCAGGTACTTGAAGTTCATATGGGTGCT GCAGCTAAGGGTATCGGTAATCGTATTACTGAGATGCTTGAAGAGCAGCGCGAATTGGCAGAACTTCGCGGCTACATCAA AGAAGTTTATGAGTTAGGTGACGAAGTGCAACAGCGCGTCGATATCGATTCATTTACTGATGATGAAGTACTGCGTCTTG CTAAAAACCTTAAAGGCGGTGTACCAACAGCTACACCTGCGTTTGATGGTGCCAAAGAGAAAGAGATCAAGCAGATGCTT GCTCTTGCAGGTTTACCGACTTCAGGTCAGCTAACGCTGTGTGATGGTCGTACTGGTAACGAATTTGAGCGTCAAGTAAC CGTTGGTTACATGTACATGCTCAAGCTTAACCACTTGGTTGACGATAAGATGCACGCCCGTTCTACTGGTTCGTACAGTC TTGTTACTCAGCAGCCATTGGGTGGTAAAGCACAGTTCGGTGGTCAGCGTTTCGGTGAGATGGAAGTATGGGCACTAGAA GCATACGGTGCTGCATATACCCTTCAGGAAATGCTAACTGTTAAGTCAGATGATGTGAACGGTCGTACTCAGATGTATAA GAACATCGTCGACGGTAACCATCAGATGCAACCAGGTATGCCTGAATCTTTCAACGTATTGTTGAAAGAGATCCGTTCAC TCGGTATTAATATCGAGTTGGATCAAAAGTAA Protein sequence : MVYSYSEKKRIRKDFGKRQKVLDIPYLLSIQLDSFKKFTDQDPTGERGFEAAFRSVFPIKSFSGNSELQYVSYKLGEPVF DVKECQIRGITYSAPLRVKLRMVLYDREAAPGTVKDIKEQEVYMGDIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHD RGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDALFVRIDRRRKLAASIILRALDYSTQDILDLFFDRVNFKIKQDSLVMD LVADRLRGETASYDIKDAEGTVLVEKGRRITARHIRQLEKTNTTELEVPVEYIAGKISGQDYIDPDTGEVLVSANAEIGL EDLAKLSLAGIKEVSTLYINELDNGAYISDTLRIDSTTNRLEALVEIYRMMRPGEPPTKDAAEALFNNLFFSEERYDLSK VGRMKFNRRLSIDDDEGTGILSKEDIVAVMKNIIAIRNGLDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERL SLGDLNELMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLC PIETPEGPNIGLINSLSTFARTNNYGFLETPYRKVIDGVVTDEVDYLSAIEEGRYVIAQAIVELDENNRMMDELIACRHK GDSTFMGAADIQYMDVSPQQIISVAASLIPFLEHDDANRALMGANMQRQAVPTLKADKPLVGTGIERTLAVDSGVVVAAK RGGYVDYVDASRIVVKVDEAELTPGEAGIDIYNLTKYTRSNQNTCINQRPCCSVGDPVVRGDVLADGPSTDLGDLALGQN MRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKG GDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVKGTIIDVQVFTRDGVDKDKRAVEIEEMHIAQAKKD LTEEFQILEDGVLGRARNLLLGAGFDEAQLDAIPRSQLLMQTIDDEAKQTELEQLAEQAEELKADFDKKFEVKRRKITQG DDLAPGVLKIVKVYLAVKRTIQPGDKMAGRHGNKGVISKICPVEDMPYDEKGNPVDIVLNPLGVPSRMNIGQVLEVHMGA AAKGIGNRITEMLEEQRELAELRGYIKEVYELGDEVQQRVDIDSFTDDEVLRLAKNLKGGVPTATPAFDGAKEKEIKQML ALAGLPTSGQLTLCDGRTGNEFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALE AYGAAYTLQEMLTVKSDDVNGRTQMYKNIVDGNHQMQPGMPESFNVLLKEIRSLGINIELDQK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 67 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 67 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP000034.1.gene3741. | Protein | 0.0 | 80 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP001918.1.gene250.p | Protein | 0.0 | 80 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP001138.1.gene4362. | Protein | 0.0 | 80 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_002695.1.914942.p | Protein | 0.0 | 80 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP000647.1.gene4402. | Protein | 0.0 | 80 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP004022.1.gene2794. | Protein | 0.0 | 79 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_002516.2.881699.p | Protein | 0.0 | 71 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP000675.2.gene392.p | Protein | 0.0 | 69 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_009085.4918494.p0 | Protein | 0.0 | 67 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_011595.7060572.p0 | Protein | 0.0 | 67 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_010410.6003841.p0 | Protein | 0.0 | 67 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_011586.7046027.p0 | Protein | 0.0 | 67 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_010400.5987325.p0 | Protein | 0.0 | 67 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_010611.6233925.p0 | Protein | 0.0 | 67 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_011035.1.6448762. | Protein | 0.0 | 65 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP002695.1.gene18.p0 | Protein | 0.0 | 64 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_008702.1.4609796. | Protein | 0.0 | 64 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | AM180355.1.gene120.p | Protein | 0.0 | 48 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | CP001581.1.gene3846. | Protein | 0.0 | 47 |
| swp_2003 | YP_002311346.1 | DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) | NC_012469.1.7686402. | Protein | 1e-177 | 45 |
