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Name : rpoB (THA_1345) Accession : YP_002335131.1 Strain : Thermosipho africanus TCF52B Genome accession: NC_011653 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 1368116 - 1371634 bp Length : 3519 bp Strand : - Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme DNA sequence : ATGAAAGAGATTAAAAGTGGAAAAAGGACCCGTTTTTCTTTTGGAAGGGTCCAGGCACCTATCCCAGTTCCCAACCTCGT GGAAATTCAAACAAAATCTTACCAGGATTTCCTCGAGAATGGGATACTAAAAGTACTTAAAAAGTTCTCCCCTATAACAT CTTCCAAATCAGATTTGAGAAAGGAAAAGGGATTTTCCCTTGAGTTTGTTTCTGTACGTGTTGGTGAACCACAAAATACT GTTCAAGAATGTAAAGAAAGGCTTTTAACTTACACAGTTCCAGTATATACAACAGTTCGTATTACCGATAACAGCACGAA TGAAATGATAGAAGAAGAAGCTTTCTTGGGGTATTTACCATACATGACTCCAAGAACAACATTTATAATCAACGGTGCTG AAAGAGTTGTTGTAAACCAACTTGTAAGAAGCCCTGGTATATATTTTGTGGAAGAGCCAAGAAAAACAAGTGGAACTCGT CCGATTTATGTCGCTCATTTCTTGCCTGTAAGGGGAGCTTGGCTTGAAATATTGTTAAACCTTAACGATGAAGTATTTTA TGCAAGAATTGACAGAAAAAGAAGAGTTAATCTTTTCTTACTGCTCAAGGCACTAGGATATAGTGATGACTTAAAGCTTT TATCACTCTTCCCACAATGGATTGATGTCGATGACGAATACACATTAATGCATTCTGAAGGACTTGTCGTACTTGAAGAT GTTAAAACAAAAAGTGGTGAATTAATAGCAAAACGTGGTGATGTTATAACTCAAGGATTAATTGAAAAACTTGCAAATTC TGAAATTGAAAAGATTAAAGTAGCTCACAGATATGCTGTAAATACATTAGAAAAGCTTAAACATACATATGGAGATGACG TAGAAGAAAATAGAGCATATATTGAAATCTTTAGAAAATTAAGACCTGGTGAACTCCCAAGAATAAATGCTGCAAAAATA TTCTTAAATAATCTTTACTTTAATGAAGAAAGATTTGAACTTTCTGAAGTTGGTCGTTTTAAAATGAATAACAGACTCGA AGAAGCATATAGAAAATACTTGATTGATGTAGAAGGTAAATCACCCGAAGAAGTAGAAGGAGTTAAATATACAGAAACTT CCAATGTTTTAACCCCTATGGATATTGTCCTTGCATCAAGAAATTTAATTGAAATAGATAAACACCCAGGAACAATGGAT ACAAAAGACCACCTTGGAAACAAAAGGGTTAGAACCGTTGGAGAACTTATCAGAATTGAATTTGAAAGAGCATTTTCAAA AGCTGTTTTCATGATCCAAGAAAAACTTGCTACATATACTTCCCTTGATAAAATATCAGTTCAAAGTCTTATTAATGTTA GATCAATTATCGCAACTATAAATTCATTCTTTGCAACAAATCCTCTTTCACAATTTATGGATCAAACAAATCCTCTTGCA GAACTTACACACAAGAGAAGGCTTACAGCAGTTGGTCCTGGTGGATTAAAAAGAGAACGCGCAAGATTTGAAGTTCGTGA CGTTCACCACTCACACTATGGAAGAATGTGTCCAATTGAAACACCTGAAGGTGCAAATATAGGTCTTATTACATCACTTT CAGTATATTCAACAATTGATAAATATGGATTTTTGATAACACCTTATGTAAAAGTAGTAAAAGGAAAAGTAACAGACGAA ATTGTTTACCTTACAGCAGATGAAGAAGAAAATTACAAAATAGCTCCATCAACAACTCCCGTTGATGAAGAAGGAAATAT TATCCCAGAAAATGTTACAGTCAGATATGAAGAAAAGGTATTGTATGTTAGTAAATACGATGTTCAATTTTTAGATGTTG CACCAAACCAAATCGTCAGTGTCTCTACATCACTAATTCCATTCTTGGAACACGACGATGCTAACAGGGCTCTCATGGGT TCAAACATGCAAAGACAAGGTGTTCCACTAATAGAAACAGAAGCTCCAAGGGTTGGAACAGGAATGGAATGGGAAGCTGC AAAATACTCTGGTACACTTGTCTTAGCAAAACACGATGGTATTGTTAAAAAAGTAGATGCTAATAAAATAATAATTCATA GAATAGATGAAAATGGAAAAGAAATGTACGATTCAATGGGAAATCCTGTTCTTGATACATACGAACTACTCAAATTTACA AGAACAAACCAAGATACATGTATAAATCAAAGACCTATTGTTAATGTAGGAGAAGTTGTTAAAAAAGATGATCCAATAGC AGATGGCCCTGCAACGGACATGGGGGAACTTGCTCTTGGTAAGAACGTCCTTGTTGCATTTGTACCTTGGGAAGGTTATA ACTTTGAAGATGCTATTCTTATAAGCGAAGAACTTCTTGAAAAAGAAACATACACTTCAGTTCATATAGAAGTGTATGAA ACAACAGCAAGAGATACAAGACTTGGTCCTGAAGAAATTACACCTGATATTCCAAATGTAAGTAAAGAAAAATTAAGAAA CTTGGATGAAGATGGAATTATAAGAATCGGTGCATATGTACAAGAAACGGATATATTAGTTGGTAAGGTTACACCAAAGA GCGAAAGTGATACAACTCCAGAAGAAAAAATTATCAGATCAGTCTTTGGTGAAAAAGGTAAAGAAGTAAAAGATTCATCA TTAAGGGTTCCACACGGTATTGAAGGAAGAGTCATTGCAGTGCACGTATTTGATAAGGAAAAAGATGGAGACCTTGGACC AGGGGTCAATAAATTAATAAGGGTTTATGTTGCAATAAGAAAACCACTTGAAGTTGGAGATAAACTTGCAGGAAGACACG GTAACAAAGGTGTTGTATCAAAGATACTTCCAAAAGAAGATATGCCATTTTTACCAGATGGAACTCCTGTCCAAGTTGTA TTAAGTCCATTGGGTGTTCCATCTCGTATGAACGTAGGTCAAATTCTTGAAACAAGTTTAGGATGGCTTGCAATGCTTAC AAATAAATGGTTTGCAACACCTGTATTTGATGGTGCAAAAGAAAAAGACATTCTCCCAGAACTTTACAAAGCAAGAAAGA AACTTGGACTTGAAGTTGGAGATGATGAAAACAATCCAACTGGAAAAGTTACTTTAAGAGACGGTAGAACTGGACTCGAG TTTGATCACCCAATACTTGTCGGTTATATGTACGTAATGAAGCTAATTCACATAGCAAGAGATAAAATACATGCTAGATC AACTGGACCTTACTCATTAATTCACCAACAACCATTGGGCGGTAAAGCACAATTTGGTGGTCAAAGGTTTGGAGAAATGG AAGTTTGGGCGCTTGAAGCATATGGTGCTGCACATACATTGAATGAAATGCTTACAGTAAAGAGTGATGATATAATGGGA AGAAATGAGGTTTACAAGGCAATAATGAAAGGTAAAAATATTCCTGATCCTGGTCTTCCAGAAAGTTTCAAAGTTCTTGT AAGAGAACTAAGAGGAATCGCACTAGACGTCAGAGTATATGACAGTGAAGGAAACGAAATAGACATCGAAAAGTTATAA Protein sequence : MKEIKSGKRTRFSFGRVQAPIPVPNLVEIQTKSYQDFLENGILKVLKKFSPITSSKSDLRKEKGFSLEFVSVRVGEPQNT VQECKERLLTYTVPVYTTVRITDNSTNEMIEEEAFLGYLPYMTPRTTFIINGAERVVVNQLVRSPGIYFVEEPRKTSGTR PIYVAHFLPVRGAWLEILLNLNDEVFYARIDRKRRVNLFLLLKALGYSDDLKLLSLFPQWIDVDDEYTLMHSEGLVVLED VKTKSGELIAKRGDVITQGLIEKLANSEIEKIKVAHRYAVNTLEKLKHTYGDDVEENRAYIEIFRKLRPGELPRINAAKI FLNNLYFNEERFELSEVGRFKMNNRLEEAYRKYLIDVEGKSPEEVEGVKYTETSNVLTPMDIVLASRNLIEIDKHPGTMD TKDHLGNKRVRTVGELIRIEFERAFSKAVFMIQEKLATYTSLDKISVQSLINVRSIIATINSFFATNPLSQFMDQTNPLA ELTHKRRLTAVGPGGLKRERARFEVRDVHHSHYGRMCPIETPEGANIGLITSLSVYSTIDKYGFLITPYVKVVKGKVTDE IVYLTADEEENYKIAPSTTPVDEEGNIIPENVTVRYEEKVLYVSKYDVQFLDVAPNQIVSVSTSLIPFLEHDDANRALMG SNMQRQGVPLIETEAPRVGTGMEWEAAKYSGTLVLAKHDGIVKKVDANKIIIHRIDENGKEMYDSMGNPVLDTYELLKFT RTNQDTCINQRPIVNVGEVVKKDDPIADGPATDMGELALGKNVLVAFVPWEGYNFEDAILISEELLEKETYTSVHIEVYE TTARDTRLGPEEITPDIPNVSKEKLRNLDEDGIIRIGAYVQETDILVGKVTPKSESDTTPEEKIIRSVFGEKGKEVKDSS LRVPHGIEGRVIAVHVFDKEKDGDLGPGVNKLIRVYVAIRKPLEVGDKLAGRHGNKGVVSKILPKEDMPFLPDGTPVQVV LSPLGVPSRMNVGQILETSLGWLAMLTNKWFATPVFDGAKEKDILPELYKARKKLGLEVGDDENNPTGKVTLRDGRTGLE FDHPILVGYMYVMKLIHIARDKIHARSTGPYSLIHQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLNEMLTVKSDDIMG RNEVYKAIMKGKNIPDPGLPESFKVLVRELRGIALDVRVYDSEGNEIDIEKL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 2e-170 | 43 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 2e-170 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_002335131.1 | DNA-directed RNA polymerase subunit beta | AE000516.2.gene708.p | Protein | 0.0 | 52 |
| rpoB | YP_002335131.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 4e-168 | 43 |
| rpoB | YP_002335131.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 2e-163 | 43 |
| rpoB | YP_002335131.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 9e-171 | 43 |
| rpoB | YP_002335131.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 9e-171 | 43 |
| rpoB | YP_002335131.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 9e-171 | 43 |
| rpoB | YP_002335131.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 9e-171 | 43 |
| rpoB | YP_002335131.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 8e-171 | 43 |
| rpoB | YP_002335131.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 1e-170 | 42 |
| rpoB | YP_002335131.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 1e-162 | 42 |
| rpoB | YP_002335131.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 3e-166 | 41 |
