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Name : secD (EFER_2617) Accession : YP_002383723.1 Strain : Escherichia fergusonii ATCC 35469 Genome accession: NC_011740 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2685755 - 2687602 bp Length : 1848 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : GTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAA CCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGCGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCC AGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCC ACTGACACCCAACTGCGCGCTCGTGAAGCGTTGCTGGATATTCTGGGTGATAAGTACGTCGTGGCGCTTAACCTTGCTCC GGCAACGCCACGCTGGCTGGCAGCTATTCACGCTGAGCCAATGAAGCTTGGTCTCGATTTGCGTGGCGGCGTTCACTTTC TGATGGAAGTGGATATGGACACCGCGCTTGGCAAACTCCAGGAACAAAATATCGATAGCCTGCGCAGCGACCTGCGCGAA AAGGGCATCCCATACACCACCGTTCGTAAAGATAAAAATTACGCACTGACTATCACTTTCCGTGATAGCAAAGCACGTGA TGAAGCTATCTCTTACTTGTCTCCACGCCATCAGGATTTAGTCATCTCCAGTCAGGGCGATAATGCTCTGCGTGCCGTAA TGACCGATGCGCGTCTGAGTGAAGCCCGCGAGTATGCGGTGCAGCAGAACATCAATATCCTGCGTAACCGTGTTAACCAA CTTGGTGTGGCTGAACCGGTGGTACAACGTCAGGGGGCTGACCGCATCGTTGTAGAACTGCCTGGTATCCAGGACACCGC GCGTGCGAAAGAGATTCTGGGGGCGACGGCAACGCTGGAATTCCGTCTGGTAAACACCAACGTTGATCAGGCCGCTGCTG CGTCTGGCCGCGTACCGGGTGACTCAGAAGTGAAACAGACTCGCGAAGGTCAGCCGGTAGTGCTGTACAAACGCGTGATT CTGACCGGTGACCATATTACCGACTCCACTTCAAGCCAGGACGAATACAACCAGCCGCAGGTTAACATCTCGCTCGATAG CGCAGGTGGTAACATCATGTCTAACTTCACTAAGGACAACATCGGCAAACCGATGGCGACCCTGTTTGTGGAGTACAAAG ACAGCGGTAAGAAAGATGCAAACGGTCGTGCGGTTCTGGTGAAACAGGAAGAGGTGATAAACATCGCTAACATCCAGTCT CGTCTGGGTAACAGCTTCCGTATCACTGGTATTAATAACCCGAACGAAGCGCGTCAGCTGTCGCTCCTGCTTCGTGCCGG TGCGTTGATTGCGCCGATTCAGATTGTTGAAGAACGTACCATTGGCCCGACTCTGGGTATGCAGAACATCGAACAGGGGC TGGAAGCGTGTCTGGCTGGCCTGCTAGTTTCTATTCTGTTTATGATCCTCTTCTACAAGAAGTTCGGTCTGATTGCGACC AGTGCTCTGGTTGCTAACTTGATCTTGATTGTCGGCATTATGTCACTGTTGCCTGGTGCAACGCTGAGTATGCCGGGTAT CGCAGGTATCGTCTTAACCCTTGCGGTGGCAGTCGATGCGAACGTACTGATCAACGAACGTATCAAAGAAGAGTTGAGCA ACGGACGTTCTGTTCAACAGGCAATTGATGAAGGTTATCGCGGTGCATTCAGTTCCATCTTCGATGCGAACATCACCACG CTGATTAAAGTCATCATCCTGTACGCAGTGGGTACCGGGGCAATTAAAGGGTTCGCGATTACTACCGGTATCGGTGTGGC GACGTCGATGTTTACTGCGATTGTCGGTACTCGCGCCATCGTAAACCTGCTATATGGCGGCAAACGCGTCAAGAAGCTGT CAATCTGA Protein sequence : MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDS TDTQLRAREALLDILGDKYVVALNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE KGIPYTTVRKDKNYALTITFRDSKARDEAISYLSPRHQDLVISSQGDNALRAVMTDARLSEAREYAVQQNINILRNRVNQ LGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVI LTGDHITDSTSSQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINIANIQS RLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMILFYKKFGLIAT SALVANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANITT LIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 3e-121 | 49 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 3e-121 | 49 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 3e-121 | 49 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-121 | 49 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-121 | 48 |
