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Name : glcD (AFE_1665) Accession : YP_002426087.1 Strain : Acidithiobacillus ferrooxidans ATCC 23270 Genome accession: NC_011761 Putative virulence/resistance : Unknown Product : glycolate oxidase subunit GlcD Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 1437587 - 1439053 bp Length : 1467 bp Strand : - Note : identified by match to protein family HMM PF01565; match to protein family HMM PF02913 DNA sequence : ATGCCCGCGTCCCCCTACCCTACCGCTCTCCTTGCGGAATTGCAGGCGGCCTTGTCCGCGGATGCGGTCTTGCATGGTGC GGAAGATTTACGGCCATATGAATGCGACGGCCTCGCGGCAGTGCGCGAGTTGCCGCTTTGTGTGGCATTGCCCACGGACC GGGAGGGCGTACAGGCGGTCTTGCAAATCTGTCAGCGCCACGGCGTGGCGGTGGTGCCGCGTGGCGCGGGTACGGGCCTT TCCGGGGGCGCGCGCCCGCTCCGTGATGCGGTGCTTCTCAGTCTGGCCCGCTTACGTCATATTGTCGCCATCGACCGGGA AAACCGAACCGCTCGGGTTCAGCCGGGCGTGCGCAATCTGGCCATCAGCGAAGCGGCCCGCCCTTTGGGTTTGTATTACG CGCCCGATCCCTCCTCGCAGATCGCCTGCAGTATTGGCGGCAATGTAGCGGAGAACTCCGGCGGTGTGCATTGCCTGAAA TACGGGCTTACCGTCCACAACATTCTGGAGCTGGATGTGCTGACCGCCACGGGTGAAACCCTGCGGATCGGCAGTCAGGC TCTCGACAGCCCCGGCTACGATCTGCTGGCGCTAATGACCGGTTCCGAAGGATTGCTGGGTGTGGTGACGGAATGCACGG TGCGTTTGTTGCCGATGCCGGAGCATGTCCTCGTCCTGCTGGCGGCCTTTTCCAGCGTCGAGGCGGCAGCGGAGTCGGTC AGCGCCATCATTGCCTCGGGCATCATTCCCGCCGGCCTGGAGATGATGGATCGGCTCGCCATCGAAGCAGCGGAGGATTT TGTCCATGCCGGTTATCCCCGCGATGCCGCAGCCATCCTCCTTTGTGAGTTGGATGGCCCGGCCGTGGAACTGGAGGAAC AGCTACGAGAGGTCGAAACCCTGCTCCAACGCCACGGTGCCCGCGCTATCCGCATAGCCGAGGACGCAGCAACCCGTCTG CTGCTTTGGAAAGGCCGCAAGGCGGCCTTTCCGGCGGTGGGGCGTCTGGCTCCGGATTATTACTGCATGGACGGGACCAT TCCGCGCCAGCGCCTGGCGGAAGTGCTGGAGCGAATCACCGCCTGGTCCGCCGAATATGGATTGCGGGTCGCCAATGTCT TCCACGCGGGCGATGGTAATCTGCACCCGCTGATCCTTTACGACGCGAATGCCGAGGGACAGCTGCACACCGCTGAGGAA TTTGGGCGCCGCATCCTTGAACTCTGCGTGTCCGTCGGTGGCAGCGTCACCGGCGAACACGGCGTCGGCGTCGAGAAACT GGACAGCATGTGCGTTCAGTTCAACGCCGCCGAACTGGCGCAGTTGCATCGCATCAAACACGCCTTCGACCCCGAAGGTC GCCTCAACCCCGGAAAGGCCGTACCCAGCCTGCATCGCTGCGCCGAGTTGGGGGCCATGCATGTGCATCATGGCCAGTTG CCTTTCCCCGAACTGGAGCGTTTTTGA Protein sequence : MPASPYPTALLAELQAALSADAVLHGAEDLRPYECDGLAAVRELPLCVALPTDREGVQAVLQICQRHGVAVVPRGAGTGL SGGARPLRDAVLLSLARLRHIVAIDRENRTARVQPGVRNLAISEAARPLGLYYAPDPSSQIACSIGGNVAENSGGVHCLK YGLTVHNILELDVLTATGETLRIGSQALDSPGYDLLALMTGSEGLLGVVTECTVRLLPMPEHVLVLLAAFSSVEAAAESV SAIIASGIIPAGLEMMDRLAIEAAEDFVHAGYPRDAAAILLCELDGPAVELEEQLREVETLLQRHGARAIRIAEDAATRL LLWKGRKAAFPAVGRLAPDYYCMDGTIPRQRLAEVLERITAWSAEYGLRVANVFHAGDGNLHPLILYDANAEGQLHTAEE FGRRILELCVSVGGSVTGEHGVGVEKLDSMCVQFNAAELAQLHRIKHAFDPEGRLNPGKAVPSLHRCAELGAMHVHHGQL PFPELERF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 3e-138 | 66 |
