Gene Information

Name : cscD (AFE_1684)
Accession : YP_002426106.1
Strain : Acidithiobacillus ferrooxidans ATCC 23270
Genome accession: NC_011761
Putative virulence/resistance : Virulence
Product : carboxysome shell peptide
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 1457016 - 1457318 bp
Length : 303 bp
Strand : -
Note : identified by similarity to GB:AAD30515.1; match to protein family HMM PF00936

DNA sequence : 
ATGAAAATGGCAAACGTCAGCGGAGTGGCACTGGGTATGATCGAGACGCGCGGCCTGGTGCCAGCGATTGAAGCGGCAGA
CGCGATGACCAAGGCGGCGGAAGTGCGTCTGGTGGGCCGCCAGTTCGTGGGCGGTGGGTATGTCACCGTACTGGTGCGCG
GTGAGACCGGTGCGGTAAATGCGGCGGTACGCGCCGGAGCAGATGCGTGTGAGCGTGTCGGTGACGGACTGGTAGCCGCC
CATATCATCGCCCGCGTACACAGTGAAGTGGAGAATATTCTGCCCAGCAGCCCGGTGGAATGA

Protein sequence : 
MKMANVSGVALGMIETRGLVPAIEAADAMTKAAEVRLVGRQFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAA
HIIARVHSEVENILPSSPVE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 7e-11 56
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 6e-11 52
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 4e-10 48

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cscD YP_002426106.1 carboxysome shell peptide VFG1596 Protein 3e-11 56
cscD YP_002426106.1 carboxysome shell peptide VFG1597 Protein 2e-11 52
cscD YP_002426106.1 carboxysome shell peptide VFG1598 Protein 2e-10 48