|
Name : rpoB (DvMF_1455) Accession : YP_002435871.1 Strain : Desulfovibrio vulgaris Miyazaki F Genome accession: NC_011769 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : - Position : 1775852 - 1779970 bp Length : 4119 bp Strand : + Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; subunit beta is part of the catalytic core which binds with a sigma factor to produce the holoenzyme DNA sequence : ATGGGCCAACTCACGAAAAAGTTCGGCAAGATTCCCGTATCGCTCGGCATTCCGCACCTCCTGAACCTTCAGGTGGACTC GTACGTCAAATTCCTCCAGGAAGGCCTTGCCGAACGCAAGACCGACGAGGGCCTAGAAGGGGTCTTCCGGTCCGTGTTCC CCATTGAGGACTTCAACCGCACCGCCAGCCTCGAATATGTCAGCTACGACATCGGCGAGCCCAAGTTCGACCAGGCGGAA TGCATCTCGAAGGGCCTCACCTACGAAGCGCCCATCCGCATCAAGGTGCGGCTCGTGGTTTACGACGTCGACGACGATTC CGGCAACCGCACCATCCGCGACATCAAGGAACAGGACATCTATTTCGGCACCCTGCCGCTGATGACCGAGAAGGGCACCT TCATCATCAACGGCACCGAGCGTGTCATCGTCAACCAGTTGCAGCGTTCGCCGGGCATCATCTTCGAGCACGATTCGGGC AAGACCCATTCGAGCCGCAAGGTGCTGTACTCCTGCCGCGTCATTCCCATGCGCGGCTCGTGGCTCGACTTCGACTTCGA CCACAAGGACATCCTGTACGTCCGCATCGACCGCCGCCGCAAAATGCCCGCCACCATCCTGTTCAAGGCCATGGGCATGA CCAAGACGGACATCCTGGACTACTTCTACAAGAAGGAGTTCTACCGCATTTCCGCCGACGGCCGCGTGTTCTGGGAAGTG CAGAAGGACATGTTCCGCAAGGATTCGGCCTTTGCCGACATCGCGGGCCCCGACGGCACCGTGTTCGTCAAGGCGGGCAA GCCCATCACCAAGCGCGCCTGGCGCCAGATCTGCGAAGCGGGCCTTGAAACCATCGAAGTGGCTGCCGATACCCTGGACG GCCTGTTCCTTGCCGATGACGTGGTGAACCCGGCCACCGGCGAAGTGCTGGCCGAAGCCGCCGACGAAGTGACCCCCGGC GTGCAGGAACGCCTGCGCGAGGCGGGCATCGACCGCCTGCCCATCCTGCACACCAAGGGCATCGACACCTCTTCCTCGCT GCGCGACACCCTGGTGCTGGACAAGACCGCCGACAAGGAAGCCGCCCAGGTGGAAATCTACCGCCGCCTGCGCCCCTCGT CGCCGCCCACGCCCGAAATCGCGGAAAGCTTCTTCGACAACCTGTTCCGCAGCGCGGACTACTACGACCTCTCCCCCGTG GGCCGCTACAAGCTGAACCAGCGCCTTGGCCTCGACCAGTCGCTGGAACTGCGCGTGCTGACCGACGAGGACATCCTGAC CGCCATCCGCGTGCTGCTGCACCTGAAGGACAGCCACGGCCCCGCCGACGACATCGACCATCTGGGCAACCGCCGCGTGC GGCCCGTGGGCGAACTGGTGGAAAACCAGTACCGCATCGGCCTCGTGCGCATGGAACGGGCGATCAAGGAACGCATGAGC CTCCAGGAAGTCTCCACGCTCATGCCGCACGACCTGATCAACCCCAAGCCGGTGGCCGCCGTGCTGAAGGAATTCTTCGG CACCTCGCAGCTTTCGCAGTTCATGGACCAGACCAACGCCCTGTCGGAAGTGACGCACAAGCGCCGCCTGTCCGCCCTGG GCCCCGGCGGTCTGACCCGCGAACGCGCGGGCTTCGAAGTGCGCGACGTGCACACCTCGCACTATGGCCGCATCTGCCCC ATCGAAACGCCGGAAGGTCCGAACATCGGCCTCATCGTGTCGCTGACCACCTACGCCAAGGTGAACGACTACGGCTTCAT CGAGACGCCGTACCACGTCATCCGCGACACCAAGATGACCGGCGAGGTGGTCTACCTCGACGCCTCGCGCGAGCACGGTG AAGTCATCGCCCAGGCCAACGCGCCCTTCGACGCCGAAGGCAAGCTGGCCGACGAATACGTCACCACCCGCGTGAAGGGC GACGTGCTCATGTCGCCCCGCGAGGAAGTGACCCTGATGGACGTTTCGCCCAGCCAGATGGTGTCCATCTCCGCCGCGCT GATTCCGTTCCTGGAACACGACGACGCCAACCGCGCGCTCATGGGTTCGAACATGCAGCGTCAGGCCGTGCCGCTGCTGC AGTGCGAAAAGCCCCTCGTGGGCACGGGCATGGAAGGCCCGGTGGCCCAGGACTCCGGCGCGTGCATCATCGCCGAAGGT CCGGGCATCGTGCGCTACGCCGACGCCGACCGCATCATCGTCAGCTACGAGAACGGCCTGTACCCCGAACGGGGCGGCGT GCGCGCGTACGACCTGCAGAAGTTCCACAAGTCCAACCAGAACTCCTGCTTCGGCCAGAAGCCCACCTGCCACCCCGGCC AGATCGTCGCCAAGGGCGACATCCTGGCCGACGGCCCCGGCATCGAGGACGGCGAACTGGCCCTGGGCAAGAACCTGGTG GTCGCGTTCATGCCGTGGTGCGGCTACAACTTCGAAGACTCCATCCTCATCTCCGAGCGCACCGTGAAGGAAGACACCTT CACCTCGGTGCACATCGAAGAGTTCGAAGTCGTCGCGCGCGACACCAAGCTGGGACCGGAAGAAATCACCCGCGACATTC CCAACGTGGGCGAGGACATGCTGCGCAACCTGGACGGCAGCGGGATCATTCGCATCGGGGCCAACGTGAAGCCGGACGAC ATCCTCGTCGGCAAGATCACCCCCAAGGGCGAAACCCAGCTGACCCCGGAAGAAAAGCTGCTGCGCGCCATCTTCGGCGA CAAGGCCCGCGACGTGAAGAACACCTCGCTCAAGGTGCCCCCGGGCATCGAGGGCACCGTCATCGAGGTCAAGGTGTTCA ACCGCCGCTCCGGTGAAAAGGACGAGCGCGCCCGCCTGATCGAGGAATACGAACTGGGCCGTCTGGACCGCAAGGAACAG GATCACATACGCGGTCTTGGCGATGCCACCCGCGTGAAGCTGATGGCCGTGGTGGAAGGCAAGCAGATCGCCACCACCCT GGCGGGCAAGAAGAAGGGCGAGGTCATCGCCGAGGCCGGTGCCTCCGTCACCGCCGAGATGCTGGCCGACGTGCCCCTGA AGAAGCTCTCCGGCCTGTTCAAGAACCGCGAGGTCAACGAAGCCGTGGACGCCCTGCTGGAAAGCTACGACCAGCAGGTG CAGTTCATCAGCAACATCTACGAGTCCAAGCGCGGCAAGGTGACCGAAGGGGACGACCTGCCCCCCGGCGTCATCAAGAT GGTCAAGGTCTACATCGCCGTGAAGCGCAAGCTTTCGGTGGGTGACAAGATGGCCGGTCGTCACGGGAACAAGGGCGTTG TCTCCTGCATCCTGCCCGCCGAGGACATGCCGTTCTTCGCGGACGGTCGCCCGGTGGACATCGTGCTGAACCCCCTTGGC GTGCCTTCGCGTATGAACATCGGCCAGATCATGGAAACCCACCTCGGGTGGGCCGCCAAGGAAATGGGCCGTCAGCTCGC CGAAATGCTCGAACGCAACGACCCGCTGAAGGCGCTGCGCAACGAGGTGAAGCGGGCGTTCGATTCCCCAGCCATCGACT CGCTGGTCGATTCCATGGACGACGAGGACTTCCGCGCCTCCGTGGCCAAGCTGGGCCGCGGCATCGTGACCAAGACCCCC GTGTTCGACGGGGCGGCGGAAGAGGAAATCTGGTCGTGGCTGGTGCGCGCCAACATCGACGAGGACGGCAAGACCGTGCT GTACGATGGCCGCACCGGCGAACGGTTCCACAACCGCGTCACCACCGGCGTCATGTACATGCTGAAGCTCCACCACCTGG TCGACGAAAAGATCCACGCCCGCTCCACCGGCCCCTACTCGCTGGTGACCCAGCAGCCGCTCGGCGGCAAGGCCCAGTTC GGCGGCCAGCGCCTGGGTGAAATGGAAGTGTGGGCGCTGGAAGCGTACGGCGCGGCCTATCTGCTGCAGGAATTCCTGAC CGTGAAGTCGGACGACGTGACCGGCCGCGTGAAGATGTACGAGAAGATCGTGAAGGGCGACAACTTCCTGGAAGCCGGTC TGCCCGAATCGTTCAACGTGCTCGTCAAGGAACTCATGTCGCTGGGCCTCGACGTCACGCTGCACCAGGAAGAAGGCAAG AAGCGCCCGAAGCGCGTCGGCTTCATGAACGCGCTGTAA Protein sequence : MGQLTKKFGKIPVSLGIPHLLNLQVDSYVKFLQEGLAERKTDEGLEGVFRSVFPIEDFNRTASLEYVSYDIGEPKFDQAE CISKGLTYEAPIRIKVRLVVYDVDDDSGNRTIRDIKEQDIYFGTLPLMTEKGTFIINGTERVIVNQLQRSPGIIFEHDSG KTHSSRKVLYSCRVIPMRGSWLDFDFDHKDILYVRIDRRRKMPATILFKAMGMTKTDILDYFYKKEFYRISADGRVFWEV QKDMFRKDSAFADIAGPDGTVFVKAGKPITKRAWRQICEAGLETIEVAADTLDGLFLADDVVNPATGEVLAEAADEVTPG VQERLREAGIDRLPILHTKGIDTSSSLRDTLVLDKTADKEAAQVEIYRRLRPSSPPTPEIAESFFDNLFRSADYYDLSPV GRYKLNQRLGLDQSLELRVLTDEDILTAIRVLLHLKDSHGPADDIDHLGNRRVRPVGELVENQYRIGLVRMERAIKERMS LQEVSTLMPHDLINPKPVAAVLKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLTRERAGFEVRDVHTSHYGRICP IETPEGPNIGLIVSLTTYAKVNDYGFIETPYHVIRDTKMTGEVVYLDASREHGEVIAQANAPFDAEGKLADEYVTTRVKG DVLMSPREEVTLMDVSPSQMVSISAALIPFLEHDDANRALMGSNMQRQAVPLLQCEKPLVGTGMEGPVAQDSGACIIAEG PGIVRYADADRIIVSYENGLYPERGGVRAYDLQKFHKSNQNSCFGQKPTCHPGQIVAKGDILADGPGIEDGELALGKNLV VAFMPWCGYNFEDSILISERTVKEDTFTSVHIEEFEVVARDTKLGPEEITRDIPNVGEDMLRNLDGSGIIRIGANVKPDD ILVGKITPKGETQLTPEEKLLRAIFGDKARDVKNTSLKVPPGIEGTVIEVKVFNRRSGEKDERARLIEEYELGRLDRKEQ DHIRGLGDATRVKLMAVVEGKQIATTLAGKKKGEVIAEAGASVTAEMLADVPLKKLSGLFKNREVNEAVDALLESYDQQV QFISNIYESKRGKVTEGDDLPPGVIKMVKVYIAVKRKLSVGDKMAGRHGNKGVVSCILPAEDMPFFADGRPVDIVLNPLG VPSRMNIGQIMETHLGWAAKEMGRQLAEMLERNDPLKALRNEVKRAFDSPAIDSLVDSMDDEDFRASVAKLGRGIVTKTP VFDGAAEEEIWSWLVRANIDEDGKTVLYDGRTGERFHNRVTTGVMYMLKLHHLVDEKIHARSTGPYSLVTQQPLGGKAQF GGQRLGEMEVWALEAYGAAYLLQEFLTVKSDDVTGRVKMYEKIVKGDNFLEAGLPESFNVLVKELMSLGLDVTLHQEEGK KRPKRVGFMNAL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 54 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 54 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 55 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | CP000034.1.gene3741. | Protein | 0.0 | 55 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | CP001918.1.gene250.p | Protein | 0.0 | 55 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | NC_002695.1.914942.p | Protein | 0.0 | 55 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 55 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | CP000647.1.gene4402. | Protein | 0.0 | 55 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 55 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 55 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 54 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | CP001138.1.gene4362. | Protein | 0.0 | 54 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 54 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 54 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 54 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 54 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 54 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 54 |
| rpoB | YP_002435871.1 | DNA-directed RNA polymerase subunit beta | NC_008702.1.4609796. | Protein | 0.0 | 54 |
