|
Name : PLES_04681 (PLES_04681) Accession : YP_002438076.1 Strain : Pseudomonas aeruginosa LESB58 Genome accession: NC_011770 Putative virulence/resistance : Virulence Product : RNA polymerase sigma factor Function : - COG functional category : K : Transcription COG ID : COG1595 EC number : - Position : 525793 - 526311 bp Length : 519 bp Strand : - Note : Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate DNA sequence : GTGTCGGCGGGTGACGTCAGCAACAGCGAATTCGTGGGTAGCCTGTACCGGGACCACCGCGGCTGGCTGCTTGCCTGGCT GAACCGCAACCTCGGCTGCCGCCAGCGCGCCGAAGACCTCAGCCAGGACACCTTCGTTCGCCTCCTCGGCCGCCCGGAGC TGCCCGGCCTGCGCGAACCGCGCGCGTTCCTGGCGAAGGTGGCGCGCGGTCTGATGATCGACCACTTCCGCCGCGCCGCC CTTGAGCAGGCCTATCTCGCCGAACTGGCGCTGGTTCCGGAAGCGGAGCAGCCTTCGGCCGAAGAGCAGTACCTGATTCT CGAGGACCTCCGCGAGATCGATCGCCTGCTTGGCACGCTGTCGCTGAAGGCGCGTAGCGCGTTTCTCTATAGCCGCCTGG ACGGCATGCCCCACGCGGAGATCGCCGAGCGTCTCGGAGTCTCGGTGCCGCGCGTGCGCCAATACCTGGCCCAGGGTCTG CGCCAGTGCTACATCGCCCTCTACGGAGAGCCCCGGTGA Protein sequence : MSAGDVSNSEFVGSLYRDHRGWLLAWLNRNLGCRQRAEDLSQDTFVRLLGRPELPGLREPRAFLAKVARGLMIDHFRRAA LEQAYLAELALVPEAEQPSAEEQYLILEDLREIDRLLGTLSLKARSAFLYSRLDGMPHAEIAERLGVSVPRVRQYLAQGL RQCYIALYGEPR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | AAL08458.1 | FecI | Virulence | SRL | Protein | 4e-22 | 48 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| PLES_04681 | YP_002438076.1 | RNA polymerase sigma factor | VFG1049 | Protein | 2e-22 | 48 |
