Gene Information

Name : CKR_1885 (CKR_1885)
Accession : YP_002472350.1
Strain : Clostridium kluyveri NBRC 12016
Genome accession: NC_011837
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 2117239 - 2117934 bp
Length : 696 bp
Strand : -
Note : homology (Evalue<1e-4) to COG0745 [TK] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

DNA sequence : 
GTGTATATAATGGCCTGTAAAAAAATTCTTATTGTTGAAGATGAAATAAAAATAGCCAGATTTGTTCAGCTGGAACTTGA
ACATGAAGGGTATATGGTTGATCAGACTGGAGATGGGAGAGTGGGATTGGAAAAAGCCTTAAAAGGAGGCTATGACCTTA
TAATACTTGATGTTATGCTTCCCTCCCTCAATGGAATGGAAGTACTTAGAAGACTCAGGCAAATCTCGGAAATTCCCGTT
ATCATGCTTACTGCAAAGGATGAGATTATGGATAAGGTTATGGGACTTGATATAGGTGCAGAGGATTATATGACAAAACC
CTTTGCTATAGAGGAACTTCTTGCAAGAATTAGGGTGGTGTTTAAACATAAAAGCAATAATAATGTAAAAGTTAATAATA
TTATTAACGCAGGTAGTCTGCAAATGGATATTGGCAGACATATTGTTACATATGAAAATTCAGGAATAGATTTAACAAAA
AAGGAATTTGATCTTTTAAAATATTTAATGGTAAATAAAGATATTGCACTTTCCAGAGAAAATATCCTAGAAAAAGTCTG
GGGATATGATTATTTAGGGGATACAAATATAGTAGATGTGTATATTCGTTATTTAAGAAGTAAAATTGATGATAAATTCA
ACAAAAAGTATATATATACCATTCGTGGATTGGGGTATCAATTTAGGTATGAATAA

Protein sequence : 
MYIMACKKILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGMEVLRRLRQISEIPV
IMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSNNNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTK
KEFDLLKYLMVNKDIALSRENILEKVWGYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQFRYE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 9e-43 45
copR AAC33719.1 regulatory protein CopR Not tested SPI-5 Protein 7e-42 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKR_1885 YP_002472350.1 hypothetical protein NC_007793.3914065.p0 Protein 5e-44 51
CKR_1885 YP_002472350.1 hypothetical protein NC_002758.1121390.p0 Protein 5e-44 51
CKR_1885 YP_002472350.1 hypothetical protein NC_010079.5776364.p0 Protein 5e-44 51
CKR_1885 YP_002472350.1 hypothetical protein NC_002952.2859858.p0 Protein 5e-44 51
CKR_1885 YP_002472350.1 hypothetical protein NC_007622.3794948.p0 Protein 5e-44 51
CKR_1885 YP_002472350.1 hypothetical protein NC_003923.1003417.p0 Protein 5e-44 51
CKR_1885 YP_002472350.1 hypothetical protein NC_013450.8614146.p0 Protein 5e-44 51
CKR_1885 YP_002472350.1 hypothetical protein NC_002951.3238224.p0 Protein 5e-44 51
CKR_1885 YP_002472350.1 hypothetical protein AE015929.1.gene1106. Protein 4e-42 51
CKR_1885 YP_002472350.1 hypothetical protein HE999704.1.gene1528. Protein 6e-46 51
CKR_1885 YP_002472350.1 hypothetical protein BAC0308 Protein 2e-39 46
CKR_1885 YP_002472350.1 hypothetical protein BAC0125 Protein 1e-40 45
CKR_1885 YP_002472350.1 hypothetical protein BAC0083 Protein 1e-41 45
CKR_1885 YP_002472350.1 hypothetical protein AE016830.1.gene1681. Protein 8e-44 44
CKR_1885 YP_002472350.1 hypothetical protein BAC0197 Protein 1e-40 44
CKR_1885 YP_002472350.1 hypothetical protein HE999704.1.gene2815. Protein 2e-40 44
CKR_1885 YP_002472350.1 hypothetical protein NC_012469.1.7686381. Protein 9e-39 41
CKR_1885 YP_002472350.1 hypothetical protein AF155139.2.orf0.gene Protein 2e-32 41
CKR_1885 YP_002472350.1 hypothetical protein NC_012469.1.7685629. Protein 1e-36 41
CKR_1885 YP_002472350.1 hypothetical protein BAC0638 Protein 4e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
CKR_1885 YP_002472350.1 hypothetical protein VFG0596 Protein 3e-43 45