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Name : secD (HAPS_0967) Accession : YP_002475540.1 Strain : Haemophilus parasuis SH0165 Genome accession: NC_011852 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 952521 - 954332 bp Length : 1812 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGGTGATCCTTGTGGTCGCCATTGGCATTTTATACGCCCTTCCAAATTTATATGGTGAAGACCCTTCGGTACAGGTTTC CGGTACTAGAGGGCAACAAGCTTCAGCTGAAACGCTGACGCAAGTTCAATCAGCACTCGCTTCATTAAATATTACGCCTA AGGCGATGAACCTTGAAAATGGTTCGATTTTAGTGCGTTTAAATAAGGACGAGGAACAGCTTCCAGCTAAGGAAAAAATC GCTGAAGTCTTAGGCAATAATTATTCTGTCGCTTTAAACCTTGCGCCTGCAACGCCAGAATGGCTAACTTCAATCGGTGG TGAGCCGATGAAGCGTGGTTTGGATTTGCGTGGCGGTGTTCGCTTCTTAATGGAAGTGGATATGAATACGGCATTGGCGA AACAGCAAGATCAGCTACAAGATACCTTGCGTAACGATTTTCGTAAGGAAAAATGGCAATACAAAGCGGTTAAAAAAGCA GAAAATTTTGCAACAGATGTAGAATTTAATGATACCGATACTGCAGATAAAGCAGTTCGTTATATTCGCCGTACTAATCC TAATTTAGAAGCAACTTATATTTCTCCAACCGTTGTGCGTTTTGCTCAATCTGCTCAGGGGTTAGCAACTTCTCGTGATT TAGCTATCGAACAAAACTTGTCGATTTTGCGTAAGCGTGTGGAAGAACTTGGTGTGTCTGAGCCGACTATTCAACGTCAA GGGGCAGATCGTATTGTTGTTGAACTTCCAGGGGTGCAAGATACCGCTCGTGCGAAAGAGATTTTAGGGGCAACTGCAAC TCTTGAATTTCGTTTAGTCAATGGTAATGCTAACTTAGAGTCTGCGGCTCGTGGTATTGTACCTGCAGATTCGGAGATTA AATATAGTCGTGATGGTATGCCGACGGTGCTATATCGCAAAACCATTTTAGGTGGTGAGCATATTATTAATGCAACTTCG GGCAAAGATGAACGTGGTTTGCCTAATGTTAGTATTAATCTTGATGCACAAGGCGGGGATTTGATGTCAAATGCGACAAA ATCTGCTGTAGGTAAGCCGATGGCAACCCTTTATAGTGAGTTTAAAGATTCAGGTCGCCGTGATGCAAACGGGAAAGTGA TTCTTGAAAAACACGAAGAAGTGATTAACGTTGCAACCATTAACTCTCGTTTAGGTAGCTCATTCCAAATTACAGGTATT AACAGTGCGGCTGAAGCACAAAACCTTGCTGTATTACTACGTTCTGGAGCTTTGATCGCACCGATTGTGATTGTTGAAGA ACGAACTATCGGGGCTTCATTAGGTGCAGATAACGTTGCTCAAGGTATGGACGCAAGTATGTTAGGTTTAGGTCTAACGA TCTTATTCTGCGTGGTGTACTACAAAGTCTTCGGCCTATTTGCGACAGCTGCTTTATTAGCTAACTTAGTTTTAACCATC GGGTTGATGTCATTAATCGGAGCTACATTAACAATGCCTGGTATTGCAGGGATTGTGTTAGCTGTAGGTATGTCAATTGA TGCTAACGTATTGATTTATGAACGGATTAAAGAAGAAATTCGTAATGGTCGTTCTATTCAGCAGGCAATTCACGAAGGCT ATAATGGTGCATTCACCAGTATCTTCGACTCTAACTTAACCACAATATTAGTCGCGATTATTCTTTATGCAGTAGGAACA GGTCCAGTCAAAGGCTTCGCTGTGACTCTTGCATTAGGGGTAATGATCTCAATGTTCACCGCAATTACAGGGACGCGTAT GTTAGTGAACCTTGTTTACGGTGGTAAACGTGTGAAAAAACTTTGGATCTAA Protein sequence : MVILVVAIGILYALPNLYGEDPSVQVSGTRGQQASAETLTQVQSALASLNITPKAMNLENGSILVRLNKDEEQLPAKEKI AEVLGNNYSVALNLAPATPEWLTSIGGEPMKRGLDLRGGVRFLMEVDMNTALAKQQDQLQDTLRNDFRKEKWQYKAVKKA ENFATDVEFNDTDTADKAVRYIRRTNPNLEATYISPTVVRFAQSAQGLATSRDLAIEQNLSILRKRVEELGVSEPTIQRQ GADRIVVELPGVQDTARAKEILGATATLEFRLVNGNANLESAARGIVPADSEIKYSRDGMPTVLYRKTILGGEHIINATS GKDERGLPNVSINLDAQGGDLMSNATKSAVGKPMATLYSEFKDSGRRDANGKVILEKHEEVINVATINSRLGSSFQITGI NSAAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVAQGMDASMLGLGLTILFCVVYYKVFGLFATAALLANLVLTI GLMSLIGATLTMPGIAGIVLAVGMSIDANVLIYERIKEEIRNGRSIQQAIHEGYNGAFTSIFDSNLTTILVAIILYAVGT GPVKGFAVTLALGVMISMFTAITGTRMLVNLVYGGKRVKKLWI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 1e-118 | 47 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 7e-119 | 47 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-119 | 47 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-119 | 47 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-119 | 47 |
