Gene Information

Name : Hore_16720 (Hore_16720)
Accession : YP_002509417.1
Strain : Halothermothrix orenii H 168
Genome accession: NC_011899
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 1795194 - 1795958 bp
Length : 765 bp
Strand : -
Note : PFAM: FliP family; TIGRFAM: flagellar biosynthetic protein FliP

DNA sequence : 
ATGAATAAAAAGATTGCAGTAGTTTTATTGACAGTTATTATCTTGACAGGTATTTTGAGTTGTAAAGCAGGTGCAGTTGA
ATTTCAATTACCGGATATAAACCTCCAGATCAATGGTTCTAATCCTGCTGAAGGAGAAGACCTGGTCCTGTCACTGAGAA
TTTTATTACTTTTAACTGTATTATCCCTGGCACCTGCCCTTCTGGTTATGGTAACATCATTTACCAGGGTAATCGTTGTT
CTCGGATTGATCAGGCAGGCTCTGGCTACCAGGAGAATGCCGCCAAACCAGGTTCTGATAGGACTGGCTTTATTTCTAAC
AGTATTCATTATGGCCCCAGTCTGGCAGGACATAAACGAACAGGCTCTGCAACCATACTTAAATAATGAAATTACCACCC
AGCAAGCCTATGATCGAGGTATTAAACCGATCAGGGATTTTATGTTTAAGCAAACCAGGGAAAAGGATCTGGCCTTATTT
GTTAATATGACGGGAATAGAAAGGCCTGAAAACCGGGCAGACATTCCAACATATGTCCTGATTCCTGCCTTTGTTATAAG
TGAACTGAAAACGGCCTTTCAGATAGGGTTTTTAATCTATCTGCCTTTTTTAATGATAGACATGGTAGTGGCCAGTATTC
TGATGTCAATGGGGATGTTGATGTTGCCTCCGATTATTATCTCCCTGCCGTTTAAGCTCTTACTGTTTATTCTGGTAGAC
GGCTGGTATCTGGTAATAGAATCCCTGGTTAAGACATTTTACTGA

Protein sequence : 
MNKKIAVVLLTVIILTGILSCKAGAVEFQLPDINLQINGSNPAEGEDLVLSLRILLLLTVLSLAPALLVMVTSFTRVIVV
LGLIRQALATRRMPPNQVLIGLALFLTVFIMAPVWQDINEQALQPYLNNEITTQQAYDRGIKPIRDFMFKQTREKDLALF
VNMTGIERPENRADIPTYVLIPAFVISELKTAFQIGFLIYLPFLMIDMVVASILMSMGMLMLPPIIISLPFKLLLFILVD
GWYLVIESLVKTFY

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 2e-31 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 5e-32 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 7e-32 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 7e-32 42
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 7e-32 42
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 7e-32 42
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 3e-31 42
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 3e-31 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 2e-31 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-32 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 1e-30 41
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 3e-31 41
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 3e-31 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-30 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Hore_16720 YP_002509417.1 flagellar biosynthetic protein FliP VFG1259 Protein 3e-53 57
Hore_16720 YP_002509417.1 flagellar biosynthetic protein FliP VFG2016 Protein 2e-48 56
Hore_16720 YP_002509417.1 flagellar biosynthetic protein FliP VFG2494 Protein 2e-50 56
Hore_16720 YP_002509417.1 flagellar biosynthetic protein FliP VFG2338 Protein 3e-50 55
Hore_16720 YP_002509417.1 flagellar biosynthetic protein FliP VFG0519 Protein 3e-32 42
Hore_16720 YP_002509417.1 flagellar biosynthetic protein FliP VFG0394 Protein 1e-33 42
Hore_16720 YP_002509417.1 flagellar biosynthetic protein FliP VFG0044 Protein 3e-34 41