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Name : secD (Tgr7_2066) Accession : YP_002514133.1 Strain : Thioalkalivibrio sulfidophilus HL-EbGR7 Genome accession: NC_011901 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2192384 - 2194255 bp Length : 1872 bp Strand : - Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGATCAACCAGTACCCCCTGTGGAAATACCTGCTCATCGTCGTGGTCGTGGCGGTGGGTGCCCTGTATGCCATGCCGAA CCTCTACCCGGAGGATCCGGCGGTGCAGATCTCCAACACCACCACCGACGAGGTGGATGAGGCCACCCGTCGACAGGTGG AGGCGGTGCTGGCGGGGCGGGGGCTGAACCCCAAGACCGGGGTGGAGTACGACGGTCAGCACGTGCTGCTGCGCTTCGAT AACACCGATGACCAGCTGCAGGCCGCGGATATCCTGCGCACCGCGCTCATGGGCACCCAGAACGTGGTGGCCCTGAACCT GGCGCCGGCCACGCCCGACTGGCTGCGGACCTTCAACGCCCGGCCCATGTCCCTGGGCCTGGACCTGCGCGGCGGTGTGC ACTTCCTCATGGAAGTGGACATGGCGGCGGTGGTCACCGCCTCCCATGAACGCTACGTAGGCGAGTTCCGCAGCCTGCTG CGAGACGAGCGCATCCGGTACCTGTCCGTGGAGCGGGCCAGCGAGGGCGTGGTGGTGCGTTTCCGCGATGCCGCCGAACG GGATCAGGCCGGTGATTTCCTGCGCCGGGAGTACCGGGGCGACCTGGACTTCCGTAGCGATCAGGCCGGCGAAGTGTTCC TGCTCATCGCCAGTCTGACCCAGGACACCCTCACGGACCAGCGCCGCCTGGCCCTGCAGCAGAACATCACCACCCTGCGC AACCGCGTGAACGAGTTGGGCGTGGCCGAGCCCATCATCCAGCAGCAGGGTGAGGATCGTATCGTCGTGCAGTTGCCCGG CGTGCAGGACACCGCGCGTGCCAAGGAGATCCTGGGCGCCACCGCCACCCTGGAATTCCGCCTGGTGGACGAGGAGAACG ACCCCTTCGAGGCCGCCGCCACCGGACGCGTGCCCTCCGCCTCGCGCCTGTACCGGGAGCGCAACGGCAACCCGGTGCTG CTGCGCCGCCAGGTGATGCTCACCGGCGATTACATCGTTGATGCCGCTTCCGGTATCGCCCAGGACAGTGGCGGCCCTGC GGTGTTCATCAACCTGGATGCCCAGGGTGCGCGCATCTTCAGCCGGGTGACCGGCGAGAACATCGGCCGCCTGATGGGCA CGGTGTTCATCGAGACCAAGACCGAGACGGTGGAGGAAAACGGCGAGATGGTGCGCCGTACCACCCGCACCGAGGAGGTC ATCAACGTGGCGCGCATCCAGGATCAACTGGGACGGCGCTTCCAGATCACAGGCCTTGAGAGCACCCGCGAGGCCCGCAA CCTGGCCCTGCTGCTGCGTGCCGGTGCCCTGGCCGCGCCCATGACCATCGTCGAGGAGCGCACCGTGGGCCCGAGCCTGG GTCGCGACAACATCGAGCGCGGTTTTAACTCCGTGGTGATCGGCTTCATCCTGGTGCTGATCTTCATGGCGCTCTACTAC CGGGTGTTCGGCCTGGTGGCCAACGTGGCCCTGGCGCTCAACCTGGTGCTGATCGTCTCGGTGCTATCCATGCTGCAGGC GACCCTGACCCTGCCGGGCATCGCCGGTATCGTGCTCACCGTGGGCATGGCAGTGGATGCCAACGTACTGATCTTCGAAC GTATCCGTGAAGAGCTGCGTAACGGCAACTCGCCCCAGGCGGCTATCGCTTCCGGTTACGACCGCGCCTTCTCCACCATC GTGGATGCCAACATCACCACCCTGATCGCGGCCCTGGTGCTGTTCATGTTCGGTACTGGCCCCATCAAGGGCTTCGCCAT CACCCTGTCCATCGGTATCGTGATCTCCATGTTCACGGCCATCCTGGTCACACGGGCCATCATCAACCTCATCTATGGTC GCCGGCGCCGCATCAAGGCGCTGGCCATCTGA Protein sequence : MINQYPLWKYLLIVVVVAVGALYAMPNLYPEDPAVQISNTTTDEVDEATRRQVEAVLAGRGLNPKTGVEYDGQHVLLRFD NTDDQLQAADILRTALMGTQNVVALNLAPATPDWLRTFNARPMSLGLDLRGGVHFLMEVDMAAVVTASHERYVGEFRSLL RDERIRYLSVERASEGVVVRFRDAAERDQAGDFLRREYRGDLDFRSDQAGEVFLLIASLTQDTLTDQRRLALQQNITTLR NRVNELGVAEPIIQQQGEDRIVVQLPGVQDTARAKEILGATATLEFRLVDEENDPFEAAATGRVPSASRLYRERNGNPVL LRRQVMLTGDYIVDAASGIAQDSGGPAVFINLDAQGARIFSRVTGENIGRLMGTVFIETKTETVEENGEMVRRTTRTEEV INVARIQDQLGRRFQITGLESTREARNLALLLRAGALAAPMTIVEERTVGPSLGRDNIERGFNSVVIGFILVLIFMALYY RVFGLVANVALALNLVLIVSVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFERIREELRNGNSPQAAIASGYDRAFSTI VDANITTLIAALVLFMFGTGPIKGFAITLSIGIVISMFTAILVTRAIINLIYGRRRRIKALAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-112 | 49 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 2e-112 | 49 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 2e-112 | 49 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 2e-112 | 49 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-112 | 49 |
