Gene Information

Name : Tgr7_3196 (Tgr7_3196)
Accession : YP_002515252.1
Strain : Thioalkalivibrio sulfidophilus HL-EbGR7
Genome accession: NC_011901
Putative virulence/resistance : Virulence
Product : carboxysome structural peptide CsoS1B
Function : -
COG functional category : Q : Secondary metabolites biosynthesis, transport and catabolism
COG ID : COG4577
EC number : -
Position : 3346505 - 3346798 bp
Length : 294 bp
Strand : -
Note : KEGG: nwi:Nwi_1980 carboxysome structural peptide CsoS1B

DNA sequence : 
ATGGCGAATGAACGTTTTGGTGTTGCCCTTGGCATGATCGAAACCCGTGGTCTGGTGCCCGCGATCGAAGCGGCTGATGC
CATGACCAAGGCCTCCGAAGTGCGCCTGATCGGCCGTCAGTTCGTGGGTGGTGGTTATGTGACCGTGCTGGTGCGCGGTG
AGACGGGTGCTGTGAACGCCGCCGTGCGTGCCGGCGCCGATGCCTGCGAGCGCGTGGGTGACGGCCTGGTGGCTGCTCAC
ATCATCGCCCGTGTGCATTCCGAAGTGGAAAGCATCCTGCCCGAGAAGCCCTGA

Protein sequence : 
MANERFGVALGMIETRGLVPAIEAADAMTKASEVRLIGRQFVGGGYVTVLVRGETGAVNAAVRAGADACERVGDGLVAAH
IIARVHSEVESILPEKP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42077.1 hypothetical protein Not tested PAI II 536 Protein 5e-11 55
unnamed CAD42078.1 hypothetical protein Not tested PAI II 536 Protein 6e-11 50
unnamed CAD42079.1 hypothetical protein Not tested PAI II 536 Protein 4e-10 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Tgr7_3196 YP_002515252.1 carboxysome structural peptide CsoS1B VFG1596 Protein 2e-11 55
Tgr7_3196 YP_002515252.1 carboxysome structural peptide CsoS1B VFG1597 Protein 2e-11 50
Tgr7_3196 YP_002515252.1 carboxysome structural peptide CsoS1B VFG1598 Protein 2e-10 47