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Name : trd_0260 (trd_0260) Accession : YP_002521514.1 Strain : Thermomicrobium roseum DSM 5159 Genome accession: NC_011959 Putative virulence/resistance : Unknown Product : glycolate oxidase subunit glcD Function : - COG functional category : C : Energy production and conversion COG ID : COG0277 EC number : - Position : 264320 - 265780 bp Length : 1461 bp Strand : + Note : identified by match to protein family HMM PF01565; match to protein family HMM PF02913 DNA sequence : ATGGACCGTGCAACGATCCGGAGCCGTCTCGTCGAGATCGTCGGCTCGGATGGAGTGCTCGACGATCCCGAAGAACTCCT CGTGTACGAATACGACGCATCGGACGAAGTCTTTGCGGGGCATCATCGCCCGGATTTCGCAGTACTCCCGCGTACGGCGG AGCAGGTGAGTGCGGTCGTGCGCCTGGCGAACGAGTTCGGGATTCCGGTTGTCCCACGCGGTGCTGGCACCGGGCTCGCT GGTGGAGCGCTGGCTCTGCGGGGTGGGATCGTCGTGGTCGTCACCCGGATGAATCGGATTCTGGAAGTCAACGAGCAGGA TGGCTATGCCATCGTCGAGCCGGGGGTCATCAACCTCGAACTCACGCAGGCATTACAGCCGCGAGGTTATTTTTTCGCTC CCGACCCAGCTTCCCAGCGTGCCTGCACGATCGGTGGGAACGTCGGGAACAACTCCGGTGGGCCGCATTGTCTCAAGTAC GGAGTGACGACGAATCACATCCTCGGTTTGGAGGTCGTCCTGCCGGACGGTGAGCGGATCTGGACCGGTGGACCGGTTCC CGAGACGCCGGGCGTCGATCTGACCGGTGTGCTGGTCGGTTCCGAGGGGACCCTCGGCATCGTCACCAAGGTGATGGTGC GGCTGACGCGACTCCCCGAGGCAGTGAGCGTGCTGTTGGCGGCTTTCCCGAACATCGAGTCGGCCTCGCATGCCACCTCG GCGATCATCGCAGCGGGGATGCTCCCGGCAGCACTGGAAATGATGGATCAACTGACGATCAAGGCGGTCGAGGATGCGTT TCATGCCGGCTACCCGCGTGAGGCGGGGGCGGTGCTGCTCGTCGAACTCGATGGCCTGCAGGAAATCGTCGCGGAGAATA CCAGCCGGGTCGCTGAGCTCTGTCGCCAGCATGGGGCATGGGAGGTGCGGGTCGCCCGCACGAAGGAGGAGCGCGATCTC CTCTGGCTCGGACGTAAGTCGGCTTTCGGGGCGATGGGACGACTGGCACCCAACTATTATCTCGTCGATACGACCGTGCC GCGGACGAAATTGCCTGCGACTATGCGGCGAGTCGAGGAACTCAGTCGGGAATACCGGCTGTCGATCGCCAACGTCTTCC ATGCGGGCGATGGGAACCTCCATCCGCTGGTACTGTTCGATCGGCAAAGACCAGGCGAGGTCGAGCGCGTTCTGGAGTGC ACGACCGAAATCCTGCGCTACTGTGTGGATGCCGGAGGGACATTGTCCGGCGAGCACGGGATCGGCTTCGAAAAGCGCGA TTACATGACGCTGGTCTTCACGACCGAAGACTTGTGTGCGATGGCTGGCTTGAAGCGAAGCTTCGATCCGCGTGAACTCT TCAACCCGGAGAAAGTGTTGCCCACCGGTTTCCGCTGTGGTGAGGTGGCTGCGTTGCGGCAGCAGGCGATCGCTCAGCGG CTCGGCTTGGAGTACGTGTGA Protein sequence : MDRATIRSRLVEIVGSDGVLDDPEELLVYEYDASDEVFAGHHRPDFAVLPRTAEQVSAVVRLANEFGIPVVPRGAGTGLA GGALALRGGIVVVVTRMNRILEVNEQDGYAIVEPGVINLELTQALQPRGYFFAPDPASQRACTIGGNVGNNSGGPHCLKY GVTTNHILGLEVVLPDGERIWTGGPVPETPGVDLTGVLVGSEGTLGIVTKVMVRLTRLPEAVSVLLAAFPNIESASHATS AIIAAGMLPAALEMMDQLTIKAVEDAFHAGYPREAGAVLLVELDGLQEIVAENTSRVAELCRQHGAWEVRVARTKEERDL LWLGRKSAFGAMGRLAPNYYLVDTTVPRTKLPATMRRVEELSREYRLSIANVFHAGDGNLHPLVLFDRQRPGEVERVLEC TTEILRYCVDAGGTLSGEHGIGFEKRDYMTLVFTTEDLCAMAGLKRSFDPRELFNPEKVLPTGFRCGEVAALRQQAIAQR LGLEYV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| glcD | CAE85245.1 | GlcD protein | Not tested | PAI V 536 | Protein | 2e-84 | 46 |
