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Name : clpB (Avi_6053) Accession : YP_002547781.1 Strain : Genome accession: NC_011988 Putative virulence/resistance : Virulence Product : ATP-dependent Clp protease ATP-binding subunit Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG0542 EC number : - Position : 1072987 - 1075698 bp Length : 2712 bp Strand : + Note : - DNA sequence : ATGTCGCATATTGACCTCAATCGATTGATCGAATCGCTTGAGCCTAATTTGCGTGTCGCGCTTGAGACGGCTGCATCCAC AGCAGCCGGGCGCGGACACGGACAGGTTGATATTGCTCATCTGCTTGCCGCCGTCATGGATGCGGCGTCGTTTCAACCTG TGTTGGAACAATTGGGCTTGCCCATTGCAGCACTTCGCCGCGAAGTGAGCGATGCGCTCGATGACACCGTGGTGTCCGGA TCCGGTCAGCTCGCTTTATCCCAGAATATTCTGACTTTGGGTCGTGAAGCCTGGATTTGTGCTTCGCTCCAGTCTGGAAG ACGTGCGATTACGCTTGCCGATATATTTGCGGCTATGGATGATGAGCCGTCGCTTCGGGCCTTGACCCGTGGTCGTTTCC CGTCGCTGAGGATGCTGGACCGAACAGCACTCGAAACACTTTTGCAGACAGACGTTGTCGCCGAGACGCCAAAATCGTCG CTGTCTCCGGCCTCAGTCCGGGAAGACGAGTTCCTGCGACTTTACACTCATGACCTTACCGAGGATGCGCGGGCGGGCCG GCTTGATCCTGTCGTCGGCCGTGATGGCGAACTTCGCCAGATGATCGACATTTTGTTGCGCCGGCGACAGAATAACCCGA TCCTGGTCGGTGAAGCGGGCGTTGGCAAGACAGCGGTGGCCGAAGCGCTGGCGCTGGAGATTGCCGCCGGACGCGTGCCG GAAAAATTGCAATCCGTACGGCTTCTGATGCTCGATCTGACTCTGTTGCAGGCAGGCGCTGGCGTGAAGGGTGAGTTCGA ACGGCGGTTGACCGGCGTTATCGAAGCGGTGAAACGTTCGCCGGAACCTATCATCCTGTTTATCGATGAAGCGCATGGAC TGATCGGTGCCGGTGGGGCAAGCGGGCAGGGCGATGCCGCCAATATTCTCAAGCCCGCGCTAGCGCGGGGTGAAGTGCGG ACAATCGCTGCCACGACTTGGAGCGAGTACAAGAAGTATTTCGAAAAAGACGCAGCGCTTACCCGCCGCTTCCAACCCGT GCATGTGCGTGAGCCGGACGAGGAAACCGCGATCCGCATGTTACGCGGAATAGCTGAGACCTTCATGGCCCATCATGGGG TAAAGATCCGTGACGAGGCTATCGTCGCTGCCGTGCAACTTTCTGCCCGCTTTCTTCCAGCCCGCCAATTGCCTGATAAG GCGGTCAGCCTGATCGATACCGCCGCAGCCACGGTTTCGCTGGCGCGCCAGACGGTGCCGGAACAATTACTGCTTCTTAA AAGCGAGCTTGCGCATCTCACGGTCGAGACCGACTGGCTTGCCCGTGAGCCAGAAAATACGGATGTGCAGGAGCGCCGCC AGGCCGTGACCACTGAAATGGAGCGCCTGGCTAAGGAAATCGATAGCCTCCAAGCGCGCTATGATGCTGAAATTGCAGCG CTGGCAGCGAGTGACGAAGCGCCCGCCGTAGACAGTGATAAGATGGCGTCGAAGGATGCTCCTGATGTTAACGTCACACC ATTGATCACTCCTCTGCGGACACGGGGGCTTGTCCGCCGCGCGGCGTCTCTGGCGCCGACCTCCGCTGGCGAAGAAAAGC TTGTACCGCATGAGGTCGATCGCAATGTTGTTGCCGCCGTCCTGGCGCGGTGGACCGGCATTCCTCTGGGCAAACTGCTG GCCGACCAGATTGAAAGCGCAAAAAGCCTCGATATGAGGTTGAAGGAAAAGGTAATCGGCCAGGATGCCGCACTGGAACG GATCGGTGACGCCATGCGTGCGGCGCGCGCCGGGCTTTCCGATCCACGTCGTCCGCCTGCCGTGTTCATGCTGGTCGGCA TGTCGGGAACCGGTAAAACCGAAACCGCGCTGACCCTGGCTGATCTGATGTATGGTGGTAGCCAACATCTGACGACGATC AACATGTCGGAGTTCAAGGAAGAGCACAAAGTATCCATGCTGCTGGGTGCTCCTCCAGGCTATGTCGGCTATGGCGAAGG CGGCGTGCTGACCGAAGCCGTGCGGCGTCGGCCCTATGGCGTGCTGTTGCTCGACGAAATCGACAAGGCGCATCCCGGTG TCCAGGACATTTTCTATCAGGTCTTCGACAAGGGAATGTTGCGCGATGGCGAAGGCCGCGATGTTGACTTCCGCAATACC ACGATTTTCATGACGGCCAATACCGGCTCGGAATTGCTGGCCTCCTTGGCCCTTGATCCAGACACCATGCCCGAAGGTGA GGCGTTGGAAGCATTGTTGATGCCGGAACTGCAAAAGCAGTTCAAGCCGGCCTTCCTCGGACGCACGCTGCTGTTGCCGT TCATGCCGCTTGGCAAGGAGGCCCTGTCGCGGATCGTCGATATCCAGATCAACCGCATTCGGGAGCGTATTTTTTCGGCC TATGGCACAGAGCTTGCTCTGTCCGAAGAGGCCCGCAATGCGCTGGTCGGACGCGCTGTTGCAAGTGAGATCGGAGCTCG TGCCATCGAAATCATGATTGGCCGGGATCTGTTGCCGCCGCTTTCCAGCTTCTTCCTTGAGCTGGTCGCATCTGGCGCAA AGGTTACCGAAGCTCTGGTAACCCATGATGAAAAAGGGTTCGGCGTTCGCGCCGGGGCCGCTGGGGAAAAAGAGGAATTC GCCGATGCCTCGGGTGCATCGGTGGATAAGGATGCCGCGTCGGAAGGGGTATCCAGACGCATGCGGCAGTGA Protein sequence : MSHIDLNRLIESLEPNLRVALETAASTAAGRGHGQVDIAHLLAAVMDAASFQPVLEQLGLPIAALRREVSDALDDTVVSG SGQLALSQNILTLGREAWICASLQSGRRAITLADIFAAMDDEPSLRALTRGRFPSLRMLDRTALETLLQTDVVAETPKSS LSPASVREDEFLRLYTHDLTEDARAGRLDPVVGRDGELRQMIDILLRRRQNNPILVGEAGVGKTAVAEALALEIAAGRVP EKLQSVRLLMLDLTLLQAGAGVKGEFERRLTGVIEAVKRSPEPIILFIDEAHGLIGAGGASGQGDAANILKPALARGEVR TIAATTWSEYKKYFEKDAALTRRFQPVHVREPDEETAIRMLRGIAETFMAHHGVKIRDEAIVAAVQLSARFLPARQLPDK AVSLIDTAAATVSLARQTVPEQLLLLKSELAHLTVETDWLAREPENTDVQERRQAVTTEMERLAKEIDSLQARYDAEIAA LAASDEAPAVDSDKMASKDAPDVNVTPLITPLRTRGLVRRAASLAPTSAGEEKLVPHEVDRNVVAAVLARWTGIPLGKLL ADQIESAKSLDMRLKEKVIGQDAALERIGDAMRAARAGLSDPRRPPAVFMLVGMSGTGKTETALTLADLMYGGSQHLTTI NMSEFKEEHKVSMLLGAPPGYVGYGEGGVLTEAVRRRPYGVLLLDEIDKAHPGVQDIFYQVFDKGMLRDGEGRDVDFRNT TIFMTANTGSELLASLALDPDTMPEGEALEALLMPELQKQFKPAFLGRTLLLPFMPLGKEALSRIVDIQINRIRERIFSA YGTELALSEEARNALVGRAVASEIGARAIEIMIGRDLLPPLSSFFLELVASGAKVTEALVTHDEKGFGVRAGAAGEKEEF ADASGASVDKDAASEGVSRRMRQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| STY0294 | NP_454876.1 | ClpB-like protein | Not tested | SPI-6 | Protein | 3e-127 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_002547781.1 | ATP-dependent Clp protease ATP-binding subunit | VFG2076 | Protein | 5e-134 | 45 |
| clpB | YP_002547781.1 | ATP-dependent Clp protease ATP-binding subunit | VFG2084 | Protein | 7e-125 | 43 |
