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Name : LF82_015 (LF82_015) Accession : YP_002555178.1 Strain : Escherichia coli LF82 Genome accession: NC_011993 Putative virulence/resistance : Unknown Product : hypothetical protein Function : - COG functional category : - COG ID : - EC number : - Position : 244263 - 247751 bp Length : 3489 bp Strand : - Note : corresponding to LF82_p015 in publication : Miquel et al., PLoS One; 536; APEC_01; ED1a; S88; UMN026; UTI89 DNA sequence : TTGAAATCTGCGCTCAGGCCAGCGATGCCGCGGTTTAAAGTTTCTGCCACCTGGCTACTGACGCTGGCATGGATTTTTCT GCTGGTGTGGATCTGGTGGCAGGGTCCAAAATGGACGCTCTATGAGCAGCACTGGTTGGCTCCGCTGGCAAACCGCTGGC TGGCGACCGCCGTCTGGGGACTTATCGCTCTGGTCTGGCTCACCTGGCGGGTGATGAAGCGTCTGCAAAAGCTGGAAAAA CAGCAGAAACAGCAGCGGGAGGAAGAAAAAGATCCGTTGACCGTGGAACTCCACCGCCAGCAGCAATATCTGGATCACTG GCTGCTGCGCCTGCGCCGCCATCTGGATAACCGCCGTTATCTGTGGCAGTTGCCGTGGTATATGGTCATTGGTCCTGCGG GTAGCGGCAAAAGCACGCTGCTGCGCGAGGGCTTTCCGTCTGACATTGTTTACACGCCGGAAAGCATCCGGGGTGTGGAA TACCACCCGCTGATCACACCGCGAGTGGGCAACCAGGCGGTAATTTTCGATGTTGACGGCGTACTGACCACTCCCGGCGG GGATGATCTGCTCCGCCGCCTGCGCGAACACTGGCTGGGCTGGCTGATGCAAACGCGCGCTCGCCAGCCGCTCAACGGTC TTATCCTGACGCTCGATCTTCCCGATCTGCTGACGGCGGATAAATCCCGCCGTGAGACACTGGTACAAAATTTGCGCCAG CAACTTCAGGAGATCCGTCAGAGCCTGCACTGCCGTCTGCCCGTTTACGTGGTGCTGACACGGCTGGATCTGCTGAACGG CTTTGCCGCGCTGTTCCATTCACTGGATAAAAAAGACCGCGATGCGATCCTCGGCGTCACATTTACCCGCCGCGCCCATG AAAGTGACGGCTGGCGCAGCGAACTGGGGGCTTTCTGGCAGACGTGGGTACAACAGGTGAACCTGGCGCTGTCGGATCTG GTGCTCGCACAAACCGGTGCTGCTCCCCGCAGCGCTGTGTTCAGCTTCTCCCGTCAGATGCAGGGAACAGGAGAAATCGT CACCGCACTGCTCGCCGCATTGCTGGACGGTGAGAACATGGATGTAATGCTGCGTGGCGTCTGGCTCACATCCTCGCTAC AGCGTGGCCAGGTGGATGATATTTTCACGCAGTCCGCCGCCCGCCAGTACGGACTGGGTAACAGCTCGCTGGCAACCTGG CCTCTGGTGGAGACGACGCCGTATTTTACTCGCCGCCTCTTCCCGGAAGTCCTGCTGGCTGAGCCGAACCTGGCGGGTGA AAACAGCGTCTGGCTGAACAGCTCCCGGCGCAGGCTGACCGCCTTTTCCACCTGTGGCGCGGCACTGGCGGCATTGATGG TCGGAAGCTGGCACCATTATTACAATCAGAACTGGCAGTCTGGCGTTAACGTACTGGCACAAGCTAAAGCCTTTATGGAC GTACCACTACCGCAGGGAACGGATGAATTCGGCAATCTGCAATTGCCATTGCTTAACCCGGTACGCGATGCCACCCTGGC CTATGGTGATTATCGCGATCACGGTTTTCTGGCGGATATGGGATTGTACCAGGGCGCCCGCGTAGGGCCGTATGTGGAGC AAACCTACATTCAGCTTCTTGAGCAGCGTTATCTCCCCTCGTTAATGAACGGCCTGATCCGGGATCTAAACATTGCCCCG CCAGAGAGCGAAGAAAAGCTCGCTGTGCTGCGCGTAGTGCGCATGATGGAAGACAAAAGTGGGCGCAACAACGAGGCGGT AAAACAGTACATGGCGCGGCGCTGGAGCAATGAATTTCACGGCCAGCGCGATATTCAGGCGCAACTGATGGTGCATCTGG ACTATGCGCTGGAGCACACCGACTGGCACGCGCAGCGCCAAAGCAGCGACAGCGATGCTGTAAGCCGCTGGACCCCCTAT AATAAACCGGTCATTAATGCGCAACATGAACTGAGCAAGCTACCCATATACCAGCGTGTCTACCAGACCCTTCGCACCAA AGCATTAAGCGTGTTACCCGCCGATTTGAATTTGCGCGACCAGATTGGTCCCACCTTCGACAACGTGTTCGTCGCCGGTA ATGATGAAAAACTGGTGATCCCGCAGTTTCTCACCCGCTATGGCCTGCAAAGCTATTTTATCAAACAACACGACGGTCTC GTTGAGTTGACCGCGCTGGATTCGTGGGTGCTGAACCTGACGCAAAGCGTCGCCTACAGCGAGGCCGACCGTGAAGAGAT CCAGCGCCATATCACTGAACAGTACCTCAGTGACTATACCGCTACATGGCGTGCCGGAATGGATAATCTCAACGTCCGTG ACTATGAGACCATGCCGGCGCTGACCGACGCGCTGGAGCAGATTATCAGCGGTGATCAGCCATTCCTGCGTGCTCTGACG GCGCTGCGCGATAATACACACGCGCTGACGCTCTCCGGCAAACTGGACGATAAGGCGAAGGAAGCGGCGATAAATGAGAT GGATTACCGCCTGTTATCCCGGCTGGGGCATGAGTTCGCGCCGGAAAATAGCGCACTGGAGGAGCAAAAGGACAAGGCGA GTACTCTACAGGCCGTGTATCAGCAACTGACCGAGCTGCACCGTTACCTGCTGGCGATCCAGAACTCGCCAGTGTCTGGG AAATCGGCGCTGAAAGCAGTACAGCTACGGCTGGATCAAAACAGCAGCGATCCAATCTTCGCCACCCGTCAGATGGCAAA AACCCTGCCTGCGCCTCTTAACCGCTGGGTAGGTAAGCTGGCGGATCAGGCCTGGCATGTAGTGATGGTGGAAGCCGTTC GTTACATGGAAGTGGACTGGCGCGACAATGTAGTGAAACCCTTCAACGAGCAGCTTGCCGATAACTATCCGTTTAATCCG CACGCCACACAGGATGCCTCACTGGATTCGTTTGAACGTTTCTTTAAACCGGATGGCATTCTGGACAATTTCTACAAGAA CAACCTGCGCCTGTTCCTTGAAAACGATCTGACCTTTGGCGACGACGGCAGAATGTTAATCCGTGAAGATATCCGGCAGC AACTGGATACTGCGCAGAAAATCCGCAACATCTTCTTCAGCCAGCAGAACGGGCTGGGCGCACAGTTTGCCGTGGAAACC GTATCGCTTTCCGGCAATAAGCGGCGCAGCGTACTTAACCTGGACGGCCAGTTAGTGGACTACAGCCAGGGACGCAACTA CACCGCCCATCTGGTCTGGCCGAACAACATGCGTGAAGGCAATGAAAGCCAGCTGACGCTGATTGGCACCAGCGGCAGAG CACCGCGCAGTATCGCGTTCAGCGGACCGTGGGCGCAGTTCCGCCTGTTCGGCGCGGGCCAGTTGACCAATGTGACCAGT GACACCTTTAACGTGCGCTTTAACGTGGACGGCGGCGCGATGGTTTACCGGGTGCATGTGGATACCGAAGATAACCCGTT CACCGGCGGTCTGTTCAGCCAGTTCCGTTTACCGGATACGTTGTATTAA Protein sequence : MKSALRPAMPRFKVSATWLLTLAWIFLLVWIWWQGPKWTLYEQHWLAPLANRWLATAVWGLIALVWLTWRVMKRLQKLEK QQKQQREEEKDPLTVELHRQQQYLDHWLLRLRRHLDNRRYLWQLPWYMVIGPAGSGKSTLLREGFPSDIVYTPESIRGVE YHPLITPRVGNQAVIFDVDGVLTTPGGDDLLRRLREHWLGWLMQTRARQPLNGLILTLDLPDLLTADKSRRETLVQNLRQ QLQEIRQSLHCRLPVYVVLTRLDLLNGFAALFHSLDKKDRDAILGVTFTRRAHESDGWRSELGAFWQTWVQQVNLALSDL VLAQTGAAPRSAVFSFSRQMQGTGEIVTALLAALLDGENMDVMLRGVWLTSSLQRGQVDDIFTQSAARQYGLGNSSLATW PLVETTPYFTRRLFPEVLLAEPNLAGENSVWLNSSRRRLTAFSTCGAALAALMVGSWHHYYNQNWQSGVNVLAQAKAFMD VPLPQGTDEFGNLQLPLLNPVRDATLAYGDYRDHGFLADMGLYQGARVGPYVEQTYIQLLEQRYLPSLMNGLIRDLNIAP PESEEKLAVLRVVRMMEDKSGRNNEAVKQYMARRWSNEFHGQRDIQAQLMVHLDYALEHTDWHAQRQSSDSDAVSRWTPY NKPVINAQHELSKLPIYQRVYQTLRTKALSVLPADLNLRDQIGPTFDNVFVAGNDEKLVIPQFLTRYGLQSYFIKQHDGL VELTALDSWVLNLTQSVAYSEADREEIQRHITEQYLSDYTATWRAGMDNLNVRDYETMPALTDALEQIISGDQPFLRALT ALRDNTHALTLSGKLDDKAKEAAINEMDYRLLSRLGHEFAPENSALEEQKDKASTLQAVYQQLTELHRYLLAIQNSPVSG KSALKAVQLRLDQNSSDPIFATRQMAKTLPAPLNRWVGKLADQAWHVVMVEAVRYMEVDWRDNVVKPFNEQLADNYPFNP HATQDASLDSFERFFKPDGILDNFYKNNLRLFLENDLTFGDDGRMLIREDIRQQLDTAQKIRNIFFSQQNGLGAQFAVET VSLSGNKRRSVLNLDGQLVDYSQGRNYTAHLVWPNNMREGNESQLTLIGTSGRAPRSIAFSGPWAQFRLFGAGQLTNVTS DTFNVRFNVDGGAMVYRVHVDTEDNPFTGGLFSQFRLPDTLY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| aec30 | AAQ96724.1 | Aec30 | Not tested | AGI-1 | Protein | 0.0 | 99 |
| aec30 | YP_851415.1 | hypothetical protein | Not tested | PAI II APEC-O1 | Protein | 0.0 | 99 |
| pmt1 | AAN64194.1 | Pmt1 | Not tested | macrophage toxin pathogenicity island | Protein | 0.0 | 56 |
