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Name : rpoB (LF82_1959) Accession : YP_002558832.1 Strain : Escherichia coli LF82 Genome accession: NC_011993 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase beta chain Function : - COG functional category : - COG ID : - EC number : - Position : 4258184 - 4262212 bp Length : 4029 bp Strand : + Note : 536; 55989; APEC_01; ATC8739; CFT073; E24377A; ED1a; HS; IAI1; IAI39; E2348, EDL933; EC4115; 157_H7; S88; SE11; SMS_3_5; UMN026; UTI89; K12_DH10B; K12_MG1655; K12_W3110 DNA sequence : ATGGTTTACTCCTATACCGAGAAAAAACGTATTCGTAAGGATTTTGGTAAACGTCCACAAGTTCTGGATGTACCTTATCT CCTTTCTATCCAGCTTGACTCGTTTCAGAAATTTATCGAGCAAGATCCTGAAGGGCAGTATGGTCTGGAAGCTGCTTTCC GTTCCGTATTCCCGATTCAGAGCTACAGCGGTAATTCCGAGCTGCAATACGTCAGCTACCGCCTTGGCGAACCGGTGTTT GACGTCCAGGAATGTCAAATCCGTGGCGTGACCTATTCCGCACCGCTGCGCGTTAAACTGCGTCTGGTGATCTATGAGCG CGAAGCGCCGGAAGGCACCGTAAAAGACATTAAAGAACAAGAAGTCTACATGGGCGAAATTCCGCTCATGACGGACAACG GTACCTTTGTTATCAACGGTACTGAGCGTGTTATCGTTTCCCAGCTGCACCGTAGTCCGGGGGTCTTTTTTGACTCCGAC AAAGGTAAAACCCACTCTTCGGGTAAGGTGCTGTATAACGCGCGCATCATCCCTTACCGTGGTTCCTGGCTGGACTTCGA ATTCGATCCGAAGGACAACCTGTTCGTACGTATCGACCGTCGCCGTAAACTACCTGCGACAATCATTCTGCGTGCCCTGA ACTACACCACAGAGCAGATCCTCGACCTGTTCTTTGAAAAAGTTATCTTTGAAATCCGTGATAACAAGTTGCAGATGGAA CTGGTGCCGGAACGCCTGCGTGGTGAAACCGCATCTTTTGACATCGAAGCTAACGGTAAAGTGTACGTAGAAAAAGGCCG CCGCATTACTGCGCGCCATATTCGCCAGCTGGAAAAAGACGACGTCAAGCTGATCGAAGTTCCGGTTGAGTACATCGCAG GTAAAGTGGTTGCTAAAGACTACATTGATGAGTCTACCGGCGAGCTGATCTGCGCAGCGAACATGGAGCTGAGCCTGGAT CTGCTGGCTAAGCTGAGCCAGTCTGGTCATAAGCGTATCGAAACGCTGTTCACCAACGATCTGGATCACGGCCCATATAT CTCTGAAACCTTACGTGTCGACCCAACTAACGACCGTCTGAGCGCACTGGTAGAAATCTACCGTATGATGCGCCCTGGCG AGCCGCCGACTCGTGAAGCTGCTGAAAGCCTGTTCGAGAACCTGTTCTTCTCCGAAGACCGCTATGACTTGTCTGCGGTT GGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGA TGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCC GTTCTGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCT CTGGGCGATCTGGATACCCTGATGCCTCAGGATATGATCAACGCCAAGCCGATTTCCGCAGCAGTGAAAGAGTTCTTCGG TTCCAGCCAGCTGTCTCAGTTTATGGACCAGAACAACCCGCTGTCTGAGATTACGCACAAACGTCGTATCTCGGCACTCG GCCCAGGCGGTCTGACCCGTGAACGTGCAGGCTTCGAAGTTCGAGACGTACACCCGACTCACTACGGTCGCGTATGTCCA ATCGAAACCCCTGAAGGTCCGAACATCGGTCTGATCAACTCCCTGTCCGTGTACGCACAGACTAACGAATACGGCTTCCT TGAGACTCCGTATCGTAAAGTGACCGACGGTGTTGTAACTGACGAAATTCACTATCTGTCTGCTATCGAAGAAGGCAACT ACGTTATCGCCCAGGCGAACTCCAACCTGGATGAAGAAGGCCACTTCGTAGAAGACCTGGTAACTTGCCGTAGCAAAGGC GAATCCAGCTTGTTCAGCCGCGACCAGGTTGACTACATGGACGTATCCACCCAGCAGGTGGTATCCGTCGGTGCGTCCCT GATCCCGTTCCTGGAACACGATGACGCCAACCGTGCATTGATGGGTGCGAACATGCAACGTCAGGCCGTTCCGACTCTGC GTGCTGATAAGCCGCTGGTTGGTACGGGTATGGAACGTGCTGTTGCCGTTGACTCCGGTGTAACTGCGGTTGCTAAACGT GGTGGTGTCGTTCAGTACGTGGATGCTTCCCGTATCGTTATCAAAGTTAACGAAGACGAGATGTATCCGGGTGAAGCAGG TATCGACATCTACAACCTGACCAAGTACACCCGTTCTAACCAGAACACCTGTATCAACCAGATGCCGTGTGTGTCTCTGG GTGAACCGGTAGAACGCGGCGACGTGCTGGCAGACGGTCCGTCCACCGATCTCGGTGAACTGGCGCTTGGTCAGAACATG CGCGTAGCGTTCATGCCGTGGAATGGTTACAACTTCGAAGACTCCATCCTCGTATCCGAGCGTGTTGTTCAGGAAGACCG TTTCACCACCATCCATATTCAGGAACTGGCGTGTGTGTCCCGTGATACCAAGCTGGGGCCGGAAGAGATCACCGCTGACA TCCCGAACGTGGGTGAAGCTGCTCTCTCCAAACTGGATGAATCCGGTATCGTTTACATTGGTGCGGAAGTGACCGGTGGC GACATTCTGGTTGGTAAGGTAACGCCGAAAGGTGAAACTCAGCTGACCCCAGAAGAAAAACTGCTGCGTGCGATCTTCGG TGAGAAAGCGTCTGACGTTAAAGACTCTTCTCTGCGCGTACCAAACGGTGTATCCGGTACGGTTATCGATGTTCAGGTCT TTACTCGCGATGGCGTAGAAAAAGACAAACGTGCGCTGGAAATCGAAGAAATGCAGCTCAAACAGGCGAAGAAAGACCTG TCTGAAGAACTGCAGATCCTCGAAGCAGGTCTGTTCAGCCGTATCCGTGCTGTGCTGGTAGCCGGTGGCGTTGAAGCTGA GAAGCTCGACAAACTGCCGCGCGATCGCTGGCTGGAGCTGGGCCTGACCGACGAAGAGAAACAAAATCAGCTGGAACAGC TGGCTGAGCAGTATGACGAACTGAAACACGAGTTCGAGAAGAAACTCGAAGCGAAACGCCGCAAAATCACCCAGGGCGAC GATCTGGCACCGGGCGTGCTGAAGATTGTTAAGGTATATCTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGC AGGCCGTCATGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGGTACTCCGG TAGACATCGTACTAAACCCGCTGGGCGTACCGTCTCGTATGAACATTGGTCAGATCCTCGAAACCCACCTGGGTATGGCT GCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCATCCAGCG TGCGTACGATCTGGGCGCTGATGTTCGTCAGAAAGTTGACCTGAGTACCTTCAGTGATGAAGAAGTTATGCGTCTGGCTG AAAACCTGCGCAAAGGTATGCCAATCGCAACGCCGGTCTTCGACGGTGCGAAAGAAGCAGAAATTAAAGAGCTGCTGAAA CTTGGCGACCTGCCGACTTCTGGTCAGATCCGCCTGTACGACGGTCGCACTGGTGAACAGTTCGAGCGTCCGGTAACCGT TGGTTACATGTACATGCTGAAACTGAACCACCTGGTCGACGACAAGATGCACGCGCGTTCCACCGGTTCTTACAGCCTGG TTACTCAGCAGCCGCTGGGTGGTAAGGAACAGTTCGGTGGTCAGCGTTTCGGGGAGATGGAAGTGTGGGCGCTGGAAGCA TATGGCGCAGCATACACCCTGCAGGAAATGCTCACCGTTAAGTCTGATGACGTGAACGGTCGTACTAAGATGTATAAAAA CATCGTGGACGGCAACCATCAGATGGAGCCGGGCATGCCAGAATCCTTCAACGTATTGTTGAAAGAGATTCGTTCGCTGG GTATCAACATCGAACTGGAAGACGAGTAA Protein sequence : MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVF DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLD LLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAV GRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCP IETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKG ESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNM RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGG DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGD DLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMA AKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKEQFGGQRFGEMEVWALEA YGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELEDE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 71 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 71 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | CP001918.1.gene250.p | Protein | 0.0 | 99 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | CP001138.1.gene4362. | Protein | 0.0 | 99 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | NC_002695.1.914942.p | Protein | 0.0 | 99 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | CP000034.1.gene3741. | Protein | 0.0 | 99 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | CP000647.1.gene4402. | Protein | 0.0 | 99 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | CP004022.1.gene2794. | Protein | 0.0 | 94 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | NC_002516.2.881699.p | Protein | 0.0 | 74 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | NC_009085.4918494.p0 | Protein | 0.0 | 71 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | NC_010410.6003841.p0 | Protein | 0.0 | 71 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | NC_011586.7046027.p0 | Protein | 0.0 | 71 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | NC_010400.5987325.p0 | Protein | 0.0 | 71 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | NC_010611.6233925.p0 | Protein | 0.0 | 71 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | NC_011595.7060572.p0 | Protein | 0.0 | 71 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | CP000675.2.gene392.p | Protein | 0.0 | 70 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | NC_008702.1.4609796. | Protein | 0.0 | 66 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | NC_011035.1.6448762. | Protein | 0.0 | 65 |
| rpoB | YP_002558832.1 | DNA-directed RNA polymerase beta chain | CP002695.1.gene18.p0 | Protein | 0.0 | 65 |
