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Name : rpoB (HRM2_36320) Accession : YP_002604861.1 Strain : Desulfobacterium autotrophicum HRM2 Genome accession: NC_012108 Putative virulence/resistance : Unknown Product : protein RpoB Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 4083140 - 4087345 bp Length : 4206 bp Strand : - Note : DNA-directed RNA polymerase, beta chain RpoB (RNAP, beta subunit) (transcriptase, beta chain) (RNA polymerase, beta subunit) DNA sequence : ATGACCGGGAGCCTTTTGGCAAGCAAGCGCATACGAAAAGAATTTGGCAGTAAGAGCAGGGTCGTCGACATTCCTGATCT CATAGGGATGCAACGCACCTCTTTTGAACGTTTCCTCCAGAGAAATGTACCGCCTGAAGAAAGGGAAGATATCGGAATTC ATCTTGTATTCAAGTCCGTTCTTCCTATTAAAGACTTCACAGGTACCTCATCCCTTGAATATGTCTCGTATTCGTTTGGA GAGACAAAGCATTCCATGAAAGAGTGCATCAGTCGAGGGATGACCTATGAAATTCCCGTTAATATAACCGTAAGGCTCGT TGTTTATGATGTGGACAAGGATGCAGGGGTTACCTCCATTCGGGACATCAAAGAGCAGGAAATTTATTTCGGAACCATTC CTTTGATGACGAAACGTGGTACTTTTATAATTAACGGTACCGAACGCGCTGTTGTCAGCCAGCTTCACAGATCCTCAGGT GTGTTTTTCGACCATGACAAGGGAAAGAGTCATTCCAGCGGAAAGATTATCTATACCGCTCGAATCATCCCTGTCCGGGG ATCCTGGATCGATATGGAGATCGACCCCAAGGATATTGTTAATATCCGCATCGACCGACGTCGGAAATTTCCTGTGACCA TCCTTTTTAAGGCATTTGGTTACACCAATGAAGACATCTTAAGCTTCTTTTATAAAAAGGAGCAAATTGTAAAAAAAGAC GGTATTCTGTTCAAGGAGTTCAACCCCGATAACCTCAAAAGGAACCGGGCAAGTTTTGATATCCTTGATCCTGAAACCGG TGAGGCAGTTGTTAAAAAGGGGCGGTTGTTTACCCTCCGGGCCCTGAAGCAACTCCAGGTTGCCGGTCTCAAGTCCATAC CCATCAGTGAGGAGGACATCATCGGCAGGGGGTTTGCCACTTCCGTTGTCCATCCAGAAACAGAGGAGATCCTTGCAAAG GCGGGTTCACTGATTGACCCCGAGGTACTTGAGAAGATTGCTGATGCCGGGATCACTGAGTTCAGCATTCTTTACGTGGA CACCTACAGTTCTGACTCCATGCGCAAGACCCTTGCCGTGGACAAGGTTACCAGCCGTGCAGAGGCCCTGATCGAGATTT ACAGAAGGCTGAGGCCCGGAAATCCAGCCACCCCCGAGGTTGCCCAGGATTTTATCGATCATCTGTTTTTCAAGCCGGCT TATTACGACCTTTCCAATGTTGGCCGTCTCAAGATGAACCATCGGCTGGGCATGTCAACGGGCATTGACGTGAGAACCCT TCGAAGGGAGGATATTCTGCTTACAGCTGCCACCCTTGTGGAGCTCAAGGATACCCAGGGTGCCGTGGACGACATCGACC ATCTCGGAAATCGGCGTGTCCGGGCGGTTGGTGAACTTCTTGAAAACCAGTACAGGATCGGGCTTGTCAGGATGGAGCGG GCCATCAAGGAACGCATGAGCATGCAAGAGGTTGATGCCATGATGCCCCACGACCTTGTCAATCCAAAACCTGTTTCAGC CGTAGTAAGGGAGTTCTTCGGCACAAGTCAGCTCTCCCAGTTCATGGACCAGACCAATCCCTTGTCCGAGACCACCCATA AGCGACGGCTTTCGGCCCTGGGACCGGGTGGCCTTACACGGGAACGTGCAGGCTTTGAAGTCAGGGATGTTCATCCATCC CATTACGGCAGGATCTGTCCAATTGAGACTCCTGAGGGACCCAACATCGGGCTCATTGTATCCCTTTGTACCTACGCAAG GGTCAACGATTTTGGTTTTATTGAAACCCCTTACAGGATTGCAAAAGACGGTGTGGTCTCAAAACAGATTACCCATCTTT CTGCATTTGAGGAAAAAGAACATCCCATCGCCCAGGCAAACGCTGTGCTTGATGATCAAGGTCATCTGATGAACGACCTT GTCACCTCACGGGTGGGTGGAGAGTTTGAGATGGTTGCTAAAAACGACATTGAGTTCATGGATGTCTCTCCGAACCAGCT GGTTTCAGTTTCCGCCTCGTTGATTCCCTTTCTGGAGAACGATGATGCAAACCGTGCACTGATGGGTTCTAACATGCAGC GTCAGGCGGTTCCCCTGATTCGAAGCGAGGCCCCCCTTGTGGGCACTGGCATCGAAGGGGTGGTTGCCCGGGATTCAGGT GTGGCAATTGTGGCTGAGCACGATGGTATTGTTGTTGATGTGGATGCCAAACGGATTGTTGTCAAAAATACTGAAAACGG TAAAGGTTCAGATGACAGGACCGTGACCATATACACGGCTTCCAAGTTTGTTCGATCCAACCAGAATACCTGTTTTAACC ATCGACCCATCGTTAAAAAGGGTGACGCCGTAAGAAAAGGCGAGGTCATCGCCGATGGTCCCTCAACTGAAATGGGTGAG CTTGCCCTTGGAAAGAACGTTACTGTGGCTTTCATGCCCTGGGGCGGATACAACTATGAGGATTCCATCCTTGTAAGTGA ACGACTGGTCAAGGAAGGGGTATACACTTCAGTTCATGTGGAGGAATTTGAGGTTGTTGCCCGGGACACAAAGCTTGGCA AGGAGGAGATCACCCGTGATATTCCCAATGCCGGGGAAGAGGCATTAAAAGATCTCGACGACAGCGGTATCATCCGCCTG GGTGCCGAGGTCAAGCCCGGTGACATCCTTGTGGGCAAAATCACGCCCAAGGGGGAAACACAGCTGAGTCCCGAGGAAAA ACTGCTTCGCGCCATTTTTGGGGAAAAAGCAGGTGACGTTAAAGATACCTCCCTCAGAGTACCCCCCGGGGTTGAGGGGG TTGTGACCGCTGCCAAGGTATTTTCCCGAAGGGGACTTCCAAAGGATGACCGCACAAGACTGATTGAAGATCTTGAGATT GAAAAGCTTGAAAAGGATCGGGACGATGAAGTGCGTATCATCACCGAGACCATCCAGGAGCGTCTTGAAGACATCCTCGC AGGTCAGGCGCTTCAGGCTGTTGTTAAAAAAGGTAAAAAGGTAGTTGTCCCGGCAGGAACGCTGGTAACCCGTGGCCTGT TTGAGGGCATTTCTCTAACCGATTTAATGGGCCTGACTGTTGAGGACTCATCGCTTACGGAAATGGCCCATGTCATCCTT GAAAAGGCTGAGACCCAGATCAAAAAAGCCAGGGAAAACTTCAACAACCAGGCATCCCGGTATGAAAAAGGCGATGATCT GCCTCCAGGTGTGCTCAAGCTGATCAAGATCAACGTTGCCATGAAACGTGTTTTGTCGGTGGGGGATAAAATGGCAGGCC GCCACGGTAACAAGGGCGTAGTCTCCAGGATTCTCCCTGTGGCAGATTTACCTTACTTTGAAGACGGCAGGACCGTCGAC ATGGTACTCAATCCCCTTGGTGTGCCGTCAAGGATGAACGTTGGGCAGATTCTTGAAATTCACCTGGGGTGTGCTGCCAG GGGCCTTGGTCGCCAGATCGATGATCTCATCTATGAGAAAAAGACCGACGAACTGAGGGCCAGAATTAAGAGAATTTTCA CAACTCCTCTTATAAAAACGGGCGAACGGGCAAACAAGGATAAAACACATTATGATTTTTCCTCCCATTACACCGTTGAA AAGAGTATGGCCAAACGGACCAACGAGGAAGAGATTCAATTCGTTGATACCATAGACCATATGGATGACACCGAGTTCCT TGAATTTGCCTCCATGTATAAAAACGGGGTTCACATGGCCACGCCGGTTTTTGATGGTGCGGCCGAGAGCGAGATCAAGT CGCTGATCAGCTATGCCGGTCTTGATCCGTCGGGTCAGTCGACCCTCTACGACGGTCGCACGGGTGAGCCCTTTGACAAG CCCATTACCGTGGGTATCATGTACATGCTCAAGCTCCATCACCTTGTCGATGACAAGATTCATGCCCGGTCGATCGGACC CTACTCCCTTGTGACCCAGCAGCCGTTGGGCGGGAAGGCCCAGTTCGGTGGTCAGCGTCTTGGAGAGATGGAGGTTTGGG CCATGGAAGCCTATGGCGCCGCCCATGCGCTTCAGGAGTTTATTACGGTAAAATCAGATGATATGACGGGAAGGACACGC ATGTATGAAAAGATCGTCAAAGGACAGAATGTTCTTGAACCTGGAATGCCTGAATCTTTCAGGGTTCTTACCAAAGAACT CCAGAGTCTGGGTCTGGATATAAACCTTTTAGAAGGGAAAAAATAA Protein sequence : MTGSLLASKRIRKEFGSKSRVVDIPDLIGMQRTSFERFLQRNVPPEEREDIGIHLVFKSVLPIKDFTGTSSLEYVSYSFG ETKHSMKECISRGMTYEIPVNITVRLVVYDVDKDAGVTSIRDIKEQEIYFGTIPLMTKRGTFIINGTERAVVSQLHRSSG VFFDHDKGKSHSSGKIIYTARIIPVRGSWIDMEIDPKDIVNIRIDRRRKFPVTILFKAFGYTNEDILSFFYKKEQIVKKD GILFKEFNPDNLKRNRASFDILDPETGEAVVKKGRLFTLRALKQLQVAGLKSIPISEEDIIGRGFATSVVHPETEEILAK AGSLIDPEVLEKIADAGITEFSILYVDTYSSDSMRKTLAVDKVTSRAEALIEIYRRLRPGNPATPEVAQDFIDHLFFKPA YYDLSNVGRLKMNHRLGMSTGIDVRTLRREDILLTAATLVELKDTQGAVDDIDHLGNRRVRAVGELLENQYRIGLVRMER AIKERMSMQEVDAMMPHDLVNPKPVSAVVREFFGTSQLSQFMDQTNPLSETTHKRRLSALGPGGLTRERAGFEVRDVHPS HYGRICPIETPEGPNIGLIVSLCTYARVNDFGFIETPYRIAKDGVVSKQITHLSAFEEKEHPIAQANAVLDDQGHLMNDL VTSRVGGEFEMVAKNDIEFMDVSPNQLVSVSASLIPFLENDDANRALMGSNMQRQAVPLIRSEAPLVGTGIEGVVARDSG VAIVAEHDGIVVDVDAKRIVVKNTENGKGSDDRTVTIYTASKFVRSNQNTCFNHRPIVKKGDAVRKGEVIADGPSTEMGE LALGKNVTVAFMPWGGYNYEDSILVSERLVKEGVYTSVHVEEFEVVARDTKLGKEEITRDIPNAGEEALKDLDDSGIIRL GAEVKPGDILVGKITPKGETQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGVVTAAKVFSRRGLPKDDRTRLIEDLEI EKLEKDRDDEVRIITETIQERLEDILAGQALQAVVKKGKKVVVPAGTLVTRGLFEGISLTDLMGLTVEDSSLTEMAHVIL EKAETQIKKARENFNNQASRYEKGDDLPPGVLKLIKINVAMKRVLSVGDKMAGRHGNKGVVSRILPVADLPYFEDGRTVD MVLNPLGVPSRMNVGQILEIHLGCAARGLGRQIDDLIYEKKTDELRARIKRIFTTPLIKTGERANKDKTHYDFSSHYTVE KSMAKRTNEEEIQFVDTIDHMDDTEFLEFASMYKNGVHMATPVFDGAAESEIKSLISYAGLDPSGQSTLYDGRTGEPFDK PITVGIMYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAHALQEFITVKSDDMTGRTR MYEKIVKGQNVLEPGMPESFRVLTKELQSLGLDINLLEGKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 53 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 53 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_002604861.1 | protein RpoB | NC_002516.2.881699.p | Protein | 0.0 | 54 |
| rpoB | YP_002604861.1 | protein RpoB | CP000675.2.gene392.p | Protein | 0.0 | 54 |
| rpoB | YP_002604861.1 | protein RpoB | NC_009085.4918494.p0 | Protein | 0.0 | 53 |
| rpoB | YP_002604861.1 | protein RpoB | CP001918.1.gene250.p | Protein | 0.0 | 53 |
| rpoB | YP_002604861.1 | protein RpoB | NC_010611.6233925.p0 | Protein | 0.0 | 53 |
| rpoB | YP_002604861.1 | protein RpoB | NC_011595.7060572.p0 | Protein | 0.0 | 53 |
| rpoB | YP_002604861.1 | protein RpoB | NC_010410.6003841.p0 | Protein | 0.0 | 53 |
| rpoB | YP_002604861.1 | protein RpoB | NC_011586.7046027.p0 | Protein | 0.0 | 53 |
| rpoB | YP_002604861.1 | protein RpoB | NC_010400.5987325.p0 | Protein | 0.0 | 53 |
| rpoB | YP_002604861.1 | protein RpoB | NC_008702.1.4609796. | Protein | 0.0 | 53 |
| rpoB | YP_002604861.1 | protein RpoB | CP004022.1.gene2794. | Protein | 0.0 | 52 |
| rpoB | YP_002604861.1 | protein RpoB | CP001138.1.gene4362. | Protein | 0.0 | 52 |
| rpoB | YP_002604861.1 | protein RpoB | NC_002695.1.914942.p | Protein | 0.0 | 52 |
| rpoB | YP_002604861.1 | protein RpoB | CP000034.1.gene3741. | Protein | 0.0 | 52 |
| rpoB | YP_002604861.1 | protein RpoB | CP000647.1.gene4402. | Protein | 0.0 | 52 |
| rpoB | YP_002604861.1 | protein RpoB | CP002695.1.gene18.p0 | Protein | 0.0 | 52 |
| rpoB | YP_002604861.1 | protein RpoB | NC_011035.1.6448762. | Protein | 0.0 | 52 |
