|
Name : lysS (NAMH_0897) Accession : YP_002607300.1 Strain : Nautilia profundicola AmH Genome accession: NC_012115 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : 6.1.1.6 Position : 822168 - 823676 bp Length : 1509 bp Strand : + Note : class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA DNA sequence : ATGTTTAGTAACGAATATGTAAAACTTAGAATGCAAAAAGCTGAAAAGTTAAAAGAAGCAGGCATTAACCCTTACGGGCA CAATGCAAGCAGAGATACCAAAATAGCGGATTTTTTAGAAAAAAACAAAGACGTAGAGTCTCTTGAAAACAGACGTGACG AAAACAGAAAGTTTACTGTTGCGGGAAGAGTGAAGTTTTTAAGACTTATGGGGAAAGCCGCGTTTTTCAAGATTGAAGAT ATGACCGGTATTTTACAGGTGTATATGTCTAAAAACGAACTTGGAGACAAATTCAACCTGCTTAAAAAGAACCTTGAAGT TGGAGATATTGTTGAAGTAACAGGTTATCCGTTTGTTACTAAAACGGGAGAGCTCAGTATCCATGCGGACGATGTAAAAA TACTTACAAAAGCTATCCATCCGCTACCTGAAAAATTCCACGGGCTTCAGGATGTAGAAACAAGATACAGACAAAGATAT CTTGATATGATAATGAATAAAGATGTAAGAGATACGTTTTTATTAAGAAGTAAAATTGTTTCGTTAGTTAGGGAATTCTT CTTAAAACATGGATTTTTAGAAGTTGAAACTCCGATGCTTCACACTGTTGTGGGCGGTGCTAACGCAAGACCTTTTATGA CACACCATAATGCTCTTGATATTGACATGAACCTCAGAATCGCACCTGAACTTTTCCTTAAAAGACTGATAGTGGGTGGA TTCGAAGCCGTGTTTGAACTTAACAGAAACTTCAGAAACGAAGGGATTGACCATACACACAACCCTGAGTTTACTATGAT AGAGTTTTACTGGGCTTATCATACTAAAGAAGATTTAATGAAATTAACTAAAGAGCTGTTTGATTATCTTTTTGAAAAAT TAAATCTTCCTAAAAAACTTCAGTACGGTGATATGGTTATTGATTTCGATAACTGGACTACAATTACATATAGAGATTCT CTCATAAAAATCGGAAACGTTCCTGAAGAAATACTTGAAGATGTGAACGCAATGAAAAAATATCTAAAAGACCACGGTGT TGAACTTGAAGAACATATAGATTCTAAAGGTAAACTTTGGGCTGAACTTTTTGACGAGTTTGTTGAAAGTAAGCTTATCG ATCCTACATTTGTAACTGATTTTCCAATCGAAATTTCTCCGCTTGCGAGAAGAAGCGATGAAAATCCAGAGATTGCAGAG AGATTTGAGCTGTTTATTGCAGGGCGTGAAATTGCAAACGGATTTAACGAACTTAACGATCCTCTTGATCAATACGAAAG ATTCAAAGCTCAGCTTGAAGCTAAGGCTAAAGGTGATGAAGAAGGCATGGAAATGGATGAAGACTACATAAGAGCTCTTC AGTACGGAATGCCTCCTACTGCCGGTGAAGGAATAGGTATAGACAGACTTGTGATGCTTTTAACAAATTCACACTCTATT AAAGATGTGATTCTGTTCCCGACTATGAAACCTAAAAAAGAAATACAAAACGAAGACGACGTAAAATAA Protein sequence : MFSNEYVKLRMQKAEKLKEAGINPYGHNASRDTKIADFLEKNKDVESLENRRDENRKFTVAGRVKFLRLMGKAAFFKIED MTGILQVYMSKNELGDKFNLLKKNLEVGDIVEVTGYPFVTKTGELSIHADDVKILTKAIHPLPEKFHGLQDVETRYRQRY LDMIMNKDVRDTFLLRSKIVSLVREFFLKHGFLEVETPMLHTVVGGANARPFMTHHNALDIDMNLRIAPELFLKRLIVGG FEAVFELNRNFRNEGIDHTHNPEFTMIEFYWAYHTKEDLMKLTKELFDYLFEKLNLPKKLQYGDMVIDFDNWTTITYRDS LIKIGNVPEEILEDVNAMKKYLKDHGVELEEHIDSKGKLWAELFDEFVESKLIDPTFVTDFPIEISPLARRSDENPEIAE RFELFIAGREIANGFNELNDPLDQYERFKAQLEAKAKGDEEGMEMDEDYIRALQYGMPPTAGEGIGIDRLVMLLTNSHSI KDVILFPTMKPKKEIQNEDDVK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 1e-98 | 49 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_002607300.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 6e-99 | 49 |
