Gene Information

Name : pipD (SPC_2656)
Accession : YP_002638198.1
Strain : Salmonella enterica RKS4594
Genome accession: NC_012125
Putative virulence/resistance : Virulence
Product : peptidase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG4690
EC number : -
Position : 2693149 - 2694630 bp
Length : 1482 bp
Strand : +
Note : -

DNA sequence :
GTGGGAACCTTTATGAAAAAGTATCTTGCATTCGCCGTTACGCTGCTGGGTATGGGTAAAGTCATCGCCTGTACTACCCT
TTTGGTAGGCAATCAGGCTTCGGCTGACGGCTCCTTCATTATCGCGCGCAACGAGGATGGCTCGGCAAATAACGCCAAGC
ATAAGGTTATTCATCCCGTCGCGTTTCATCAACAAGGCGAGTATAAAGCACATCGGAACAATTTTAGCTGGCCGCTTCCG
GAGACAGCGATGCGCTATACGGCGATTCATGACTTTGATACTAACGATAACGCCATGGGTGAAGCCGGTTTCAATTCGGC
GGGCGTCGGAATGAGCGCAACGGAAACCATTTATAACGGCAGAGCGGCGCTGGCTGCCGATCCTTACGTGACAAAAACGG
GAATCACGGAAGACGCCATTGAGTCCGTGATCCTGCCAGTGGCGCAATCGGCGCGTCAGGGCGCCAAATTACTGGGAGAC
ATTATTGAACAAAAAGGCGCTGGCGAAGGTTTCGGTGTCGCGTTTATTGATAGCAAAGAGATATGGTATCTGGAGACGGG
AAGCGGTCATCAATGGCTGGCAGTACGACTTCCGACAGATAGCTATTTCGTTTCCGCCAATCAGGGACGTTTACGCCATT
ACGATCCGAATGATAACGCGAATTATATGGCGTCACCAACGTTAGTAAGCTTTGCGAAAAAGCAGGGATTATATGATCCG
GCCCGCGGCGAATTCGACTTTCATCAAGCCTATTCGCAGGATAACAAAAACGATATCACCTATAATTATCCGCGCGTCTG
GACGCTACAACATCAGTTTAATCCGCATCTGGATACGGTCGTTAGCGAAGGGGAAACATTTCCTGTTTTTTTAACGCCAA
TAACGAAAATTAGCGTGGCAGCAGTAAAAAACGCGTTACGCAATCACTATCAGGGAACGTCGCACGACCCTTATGCCAGT
CATAATCCACAAGAACCATGGCGACCCATATCCGTTTTTCGTACCCAGGAGTCACATATTTTACAGGTCAGACCGAAATT
ACCGCAGGCTATCGGCAACGTAGAATACATCGCCTATGGAATGCCATCTCTTAGCGTCTATCTCCCCTATTATCAGGGAA
TGCGTCATTATCAACCCGGAGATGATAAAGGAACCGATCGGGCGAGCAACGACTCTACCTACTGGACATTCCGCACGCTG
CAAACGCTGGTTATGCAGGACTACAATGCGTTTGCGCCAGATGTGCAACACGCTTGGAAAACATTTGAACAGCAAACAGC
TAAGCAGCAGTATAAGATGGAACAGAGCTATCTGAGATTATATGCGTCGCATCCGAAAGAAGCGCAACGCTTACTGCAAA
ACTTTGAAGATAAAACGATGCAAAATGCGCAAACGCTCGCCCGTCGCCTGACCAATAATATTATTACGACAATGACTTAC
CGCACAGATATGAAATATCACTTTTCAAGTACGCAACCATAA

Protein sequence :
MGTFMKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGSANNAKHKVIHPVAFHQQGEYKAHRNNFSWPLP
ETAMRYTAIHDFDTNDNAMGEAGFNSAGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSARQGAKLLGD
IIEQKGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPTDSYFVSANQGRLRHYDPNDNANYMASPTLVSFAKKQGLYDP
ARGEFDFHQAYSQDNKNDITYNYPRVWTLQHQFNPHLDTVVSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYAS
HNPQEPWRPISVFRTQESHILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWTFRTL
QTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYASHPKEAQRLLQNFEDKTMQNAQTLARRLTNNIITTMTY
RTDMKYHFSSTQP

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
pipD NP_460067.1 pathogenicity island-encoded protein D Virulence SPI-5 Protein 0.0 99
pipD NP_455591.1 putative secreted peptidase Virulence SPI-5 Protein 0.0 99
pipD AAC33721.1 dipeptidase homolog Virulence SPI-5 Protein 9e-178 99

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
pipD YP_002638198.1 peptidase VFG0594 Protein 0.0 99