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Name : rpoB (ACP_2928) Accession : YP_002755938.1 Strain : Acidobacterium capsulatum ATCC 51196 Genome accession: NC_012483 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 3390224 - 3394714 bp Length : 4491 bp Strand : + Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme DNA sequence : ATGCCGAACGAGAATCGCGCCATTCGTAGCCGTCTCGATTTTTCCAAGATTCCAACCTCTATCAAGATCCCGAACCTGAT CGAGGTCCAGCGGCGCTCCTACGAGCGTTTTCTGCAGATGGACAAGCTCCCCACCGAGCGTGAGGACAACGGTCTGCAGT CGGTCTTCACTTCGGTCTTCCCGATTGCCGACTTCCGCAATATATCGCAGCTTGACTTTGTGGATTACTCGATCGGCAAC TGGGAGTGCAAGTGCGGCCACCTCAAGGGCCTGCATCACCTGCGCACCGCCTGTACGCATTGCGGCAACATGGTCATTAC CGACCCGTTCCATCCGGGCGATGTGCTGTGCCAGAAGTGCGGCACGTACAACAAGAACACCCCTGACTTCTGTAACAAGT GCGGAGACCCCGTGGGTCTGCAGCTCAAGTATGACCAGGCGGAGTGCGAAGAGCGCGGCATGACCTTCTCCGCGCCGCTC AAGGTGACGGTGCGCCTCACCATTTATGACAAGGACCCGGAGACGGGCGCCAAGACCATCCGCGACATCAAGGAGCAGGA AGTCTTCTTTGGCGACATTCCGCTGATGACGCAGAATGGCACCTTCATCGTGAATGGCACCGAGCGCGTCATTGTGTCGC AGTTGCACCGCTCGCCGGGCGTCTTCTTTGAGACGGCCAACAACCGCACCTACTTCCTCGGCAAGATCATTCCGTACCGC GGCTCGTGGGTGGAATTTGAGTACGACCAGAAGAACACGCTCTACGTGCGCATTGACCGCAAGCGCAAGTTCCTGGGCAC GATCTTTCTGCGCGCGCTCGGCCTGAAGTCCGACGAGGAGATTCTCAAGACCTTCTACACGGTCGATCGCATTCAGGTGA AGGACGGCAAGCTCTACTGGACCGTGGCCGAAGCCGGCACGCCGACCCACCTGCTGGGCGCCAAGCCCGCGCACGCCGTC GTACACAATGGGCAGGAAATTGTTCACTCCGGCCGCAAGATCACGGCCTCGGTGCTGAAGGCGATTCGCGAGGCCAAGCT CGAGCAGATCGAGATTGACACGACCGACCTCGACGGCGCGATGACCGCGGCGGACGTAATCGACACCGAGACAGGCGAAG TGCTGCTCGAGGCCAACCACGAGCTCACGCCCGACAAGCTGCACAAGATTGTCGAGGCCGGCATTCCGACGGTTGAGGTC TTCTTCCCTGAGCGCGACGACGTGGGCAACATTATCACGAACACACTGCGGCGCGACTCGGTGCGCAAGCCTGAAGAGGC GCTCATCGAGATCTACCGCAAGCTGCGTCCGGGTGACCCGCCGACGCTCGATACCGCGACAGCGCTGTTTGAGGGCATGT TCTTTGACCCGCGCAAGTATGACTTCTCGCGCGTGGGCCGCCTCAAGTTCAACATCAAGCTCTATGAGAATGCCGAAGAG ACGCCGCTCGATCACCGCACGCTGACGGCGGGCGACTTCTATTCGACCATTCGCTACCTGCTCAAACTGCGCAAGAACAT CGGCGTGGTGGACGATATCGATCACCTGGGCAACCGCCGCGTGCGCGCGGTCGGCGAGCTGATGGAGAATCAGTTCCGCA TCGGCCTCGTGCGCATGGAGCGCGCCATCAAGGAAAAGATGAGCGTTTACCAGGAGATGTCGACGGCCATGCCGCACGAC CTCATCAACGCGAAGCCCGTCATGGCGGCCATCCGCGAGTTCTTCGGCTCTTCGCAGCTCTCGCAGTTCATGGACCAGAC CAACCCGCTCTCTGAGATCACGCACAAGCGCCGTCTCTCAGCGCTTGGGCCGGGTGGTCTCTCGCGTGAGCGCGCCGGCT TTGAGGTGCGCGACGTTCACCCGACGCACTACGGCCGCATCTGCCCGATTGAGACGCCGGAAGGTCCGAACATCGGTCTG ATCAGCTCGCTTTCCTGCTTTGCCCGCATCAACGAGTACGGCTTCATCGAGTCGCCTTACCGCCGCGTGCGCGACGGGCA GGTGCTCGACTTTGTGGCTGTCACCAATGCGGGTGAGAGCGGCCTGCGCGTGGGCGATTACCTTGAAAAGGCTGAAGCGC TCAAGCTCAACGACAAGCTGCGCGCGGAAAAGAAGCGCATCATCGAGTTCGAGCCGTTCTCGTTCTACCTGTCGGCATGG GAAGAGGATCGTCACACCATCGCGCAGGCCAACGTCAAGCTTGACGAGAACAAGCACATCGTCGAAGACCTGGTCAATGC GCGCCGGCAGGGCAACTTTGTCCTCGTCAACCGCGAAGAAGTGGACTATGTGGACGTGAGCCCGAAGCAGTTGGTTTCGG TCGCCGCATCGCTGGTGCCCTTCCTGGAGCATGACGACGCGAACCGCGCACTGATGGGCGCGAACATGCAACGCCAGTCC GTGCCTCTGCTCGTTTCCGAGGCTCCGCTGGTCGGCACCGGCATGGAAGGCGTGACCGCCCGCGACTCGGGCGCCGTCAT TCTGGCGCGCCGCAACGGCGTGGTGGACTCGGTCGACTCCGAGCGCATCATCGTGCGCGTCGAAGGCGAGCACCACCCCA CGCAGTTGTCGCGTGAGGTGGGTTCTGACATCTACCAGCTCATCAAGTTCAAGCGCTCGAACCAGAACACCTGCATCAAC CAGAAGCCGATCGTTCGCAAGGGCGACCGCGTGCTGAAGGGACAGGTCATCGCCGACGGACCCTGCACCGAGCAGGGCGA GCTGGGCCTCGGCCGCAACGTGCTGGTGGCCTTCATGCCGTGGCGCGGTTACAACTTCGAGGACGCGATCCTGATCTCAG AGAAGCTCGTCAAGGAGGACTACTACACGTCGGTCCATATTGAAGAGTTTGAGATCGAAGCCCGCGACACCAAGCTCGGG CCCGAAGAGATCACTCGCGATATCCCCAACGTGAGCGAGCATGCGCTGCGCGATCTGGACGAGAGCGGCATCATCCGCAT CGGCGCCAAGGTCAAGCACAATGACATCCTCGTGGGCAAGGTGACGCCGAAGGGCGAAACCCAGCTCACGCCGGAAGAGA AGCTGCTGCGCGCCATCTTCGGTGAAAAGGCCGGCGATGTGCGCGATGCCTCGCTGACGTGCCCTCCGGGCATTGAAGGC ACGGTGGTGGACGTCCGCATCTTCTCCCGCAAGGGCCAGGAGAAGGACGAGCGCGCCAAGCAGATTGAGGCCGAGCAGGT GGCCAAGCTCGAGAAGAACCTTGAGGACGAAATCCGCATCCTCACCGACGAGCGGCTCAAGCGCCTGGAAGCGATTCTGG GCGGCAAGGTGGTGCTGGCCGACCTGCACGACGAGCGCACCAACAAGCGCCTGCTCGTGAAGGACGCCGTGCTCGACCGC GACGCCATTGAGCGCATCTCCACCCGTAACCTCAAGCGCATTCGCTACGCTGACAAGGACCCCCGCGTCAACGAGCAGAT CGACGAGATCGAGGAGATGACCTCGCGCCAGATTGACGTGCTGCGCAAGATCACCAACGAGCGCATCGCCAAGCTGCAAA AGGGCGATGAGCTGTCGCCGGGCGTCATCAAGATGGTCAAGATCTACATCGCCATGAAGCGCAAGCTCTCGGTGGGTGAC AAGATGGCCGGCCGTCACGGCAACAAGGGTGTGATCGCGCGCATTCTTCCCGAGGAAGACATGCCGTATCTGCCCGATGG CACTCCGGTGGAGATTGTGCTGAATCCGCTTGGTGTTCCTTCGCGTATGAACGTCGGTCAGATTCTGGAGACGCATCTCG GCTGGGCCGCCCATGACCTGGGCGTGCAGGTGGCCGCGATCGTCAAGCAGCACCAGGATGCCAACGTGATTCGCGAGGTC ATCAAGGAGCGCTTCAAGGGCACGGCGGTCATCAACCAGCTCATCGAGCTGGAGGATGAGCAGCTTCTCCGGGTGGGCGC GGGCATGGCTCGCGGCATCTGGTTTGGCACGGCGGTCTTTGACGGCGCCAAGGAAGAAGAGATCAAGGCGCTGCTGGAGT CGGCCGGTCTGCCGACCTCGGGCAAGACGAAGCTCTTTGACGGCATGACGGGCGAGGCCTTTGAGCAGCCGGTCACAGTG GGCTTCATCTACATGCTCAAGCTGTCGCACCTGGTCGATGACAAGATTCACGCGCGCTCCATCGGGCCGTACTCGCTCAT CACCCAGCAGCCGCTGGGCGGCAAGGCGCAGTTCGGTGGCCAGCGCTTCGGCGAAATGGAAGTCTGGGCGCTCGAAGCCT ACGGCGCGGCTTACATTCTGCAGGAACTGCTCACCGCCAAGTCCGACGACGTTTATGGCCGCACCAAGATCTACGAGGCC ATCGTCAAGGGCGAGGCAGCCATCGAGCCGGGCGTGCCGGAGTCGTTCAACGTTCTCATCCGCGAGCTGCAGTCGCTCTG CCTCGATGTGGAGTTGATCAAGCAGGCTCCCGGCGCCGGTCCTGAGGCAGAGGACGAGAACACCGTACCTCAGTTGGCGG CAGCGGATTAA Protein sequence : MPNENRAIRSRLDFSKIPTSIKIPNLIEVQRRSYERFLQMDKLPTEREDNGLQSVFTSVFPIADFRNISQLDFVDYSIGN WECKCGHLKGLHHLRTACTHCGNMVITDPFHPGDVLCQKCGTYNKNTPDFCNKCGDPVGLQLKYDQAECEERGMTFSAPL KVTVRLTIYDKDPETGAKTIRDIKEQEVFFGDIPLMTQNGTFIVNGTERVIVSQLHRSPGVFFETANNRTYFLGKIIPYR GSWVEFEYDQKNTLYVRIDRKRKFLGTIFLRALGLKSDEEILKTFYTVDRIQVKDGKLYWTVAEAGTPTHLLGAKPAHAV VHNGQEIVHSGRKITASVLKAIREAKLEQIEIDTTDLDGAMTAADVIDTETGEVLLEANHELTPDKLHKIVEAGIPTVEV FFPERDDVGNIITNTLRRDSVRKPEEALIEIYRKLRPGDPPTLDTATALFEGMFFDPRKYDFSRVGRLKFNIKLYENAEE TPLDHRTLTAGDFYSTIRYLLKLRKNIGVVDDIDHLGNRRVRAVGELMENQFRIGLVRMERAIKEKMSVYQEMSTAMPHD LINAKPVMAAIREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLSRERAGFEVRDVHPTHYGRICPIETPEGPNIGL ISSLSCFARINEYGFIESPYRRVRDGQVLDFVAVTNAGESGLRVGDYLEKAEALKLNDKLRAEKKRIIEFEPFSFYLSAW EEDRHTIAQANVKLDENKHIVEDLVNARRQGNFVLVNREEVDYVDVSPKQLVSVAASLVPFLEHDDANRALMGANMQRQS VPLLVSEAPLVGTGMEGVTARDSGAVILARRNGVVDSVDSERIIVRVEGEHHPTQLSREVGSDIYQLIKFKRSNQNTCIN QKPIVRKGDRVLKGQVIADGPCTEQGELGLGRNVLVAFMPWRGYNFEDAILISEKLVKEDYYTSVHIEEFEIEARDTKLG PEEITRDIPNVSEHALRDLDESGIIRIGAKVKHNDILVGKVTPKGETQLTPEEKLLRAIFGEKAGDVRDASLTCPPGIEG TVVDVRIFSRKGQEKDERAKQIEAEQVAKLEKNLEDEIRILTDERLKRLEAILGGKVVLADLHDERTNKRLLVKDAVLDR DAIERISTRNLKRIRYADKDPRVNEQIDEIEEMTSRQIDVLRKITNERIAKLQKGDELSPGVIKMVKIYIAMKRKLSVGD KMAGRHGNKGVIARILPEEDMPYLPDGTPVEIVLNPLGVPSRMNVGQILETHLGWAAHDLGVQVAAIVKQHQDANVIREV IKERFKGTAVINQLIELEDEQLLRVGAGMARGIWFGTAVFDGAKEEEIKALLESAGLPTSGKTKLFDGMTGEAFEQPVTV GFIYMLKLSHLVDDKIHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYILQELLTAKSDDVYGRTKIYEA IVKGEAAIEPGVPESFNVLIRELQSLCLDVELIKQAPGAGPEAEDENTVPQLAAAD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 52 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 52 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | YP_002755938.1 | DNA-directed RNA polymerase subunit beta | CP000675.2.gene392.p | Protein | 0.0 | 54 |
| rpoB | YP_002755938.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 52 |
| rpoB | YP_002755938.1 | DNA-directed RNA polymerase subunit beta | CP004022.1.gene2794. | Protein | 0.0 | 52 |
| rpoB | YP_002755938.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 52 |
| rpoB | YP_002755938.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 52 |
| rpoB | YP_002755938.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 52 |
| rpoB | YP_002755938.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 52 |
| rpoB | YP_002755938.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 52 |
| rpoB | YP_002755938.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 52 |
| rpoB | YP_002755938.1 | DNA-directed RNA polymerase subunit beta | NC_002516.2.881699.p | Protein | 0.0 | 50 |
