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Name : hsdM (GAU_0181) Accession : YP_002759693.1 Strain : Gemmatimonas aurantiaca T-27 Genome accession: NC_012489 Putative virulence/resistance : Unknown Product : type I restriction-modification system DNA methylase Function : - COG functional category : V : Defense mechanisms COG ID : COG0286 EC number : 2.1.1.72 Position : 215724 - 217283 bp Length : 1560 bp Strand : - Note : protein synonym: type I restriction enzyme M protein DNA sequence : ATGGCACGAGCCAAGAAGGCCAGTAAGTCCGCCGCAACCTCGGCCAATATCGGCTTCGAAGCCAAGCTCTGGGCTGCCGC CGACGCCCTCCGCAACAACATGGATGCGGCCGAATACAAGCACGTCGTGCTCGGCCTGATTTTTCTCAAATACATCTCCG ACGCCTTCGAGATCAAACACGCCGAGCTCGCGAGTCAGCATGCGGACGGCGCCGATCCGGAAGATCCGGATGAGTACCGC GCCGACAACATCTTCTGGGTTCCGGCCGAGGCGCGCTGGCAGTTCCTCAAGGCCAATGCGCCGCAGCCTGGTGTCGGCAC AATGGTCGACGATGCCATGGCCGCCATCGAGCGCGACAATCCGTCGCTCAAGGGGGTGCTGCCCAAGGACTACGCGCGCC CCGGCCTCGACAAGCAGCGGCTTGGACAGATCATCAACCTGGTCAGCGATATCGAACTGGGTAGTTCGGCTGACAAGAGC AAGGACACCCTGGGCCGCGTGTATGAGTACTTCCTGTCACGTTTCGCCAGCGCCGAAGGCAAGAGCGGCGGGCAGTTCTA CACGCCATCGTATGTCGTGCGTGTGCTGGTGGAAATGCTCGCGCCGTACAAGGGGCGTGTGTATGACCCCTGCTGCGGCT CCGGTGGCATGTTCGTGCAGAGCGAGAAGTTCATCGAAGCCCACGCGGGCAAACTCGACGACATCTCCATTTACGGACAG GAGAGCAACTACACCACGTGGCGTCTGGCCAAGATGAATCTGGCCATCCGTGGCATCGATGCGCAGATCGGCCACGGAGA TACGCTGCACGATGACAAACATCCCGATCTCAAGGCCGACTATGTGTTGGCCAATCCGCCGTTCAACGACAGCGATTGGC GCGGCGAACTGCTGAAGGACGATCAGCGCTGGGCGTACGGAGCGCCGCCCGCAGGCAATGCGAACTTCGCCTGGGTGCAG CATTTCATTCATCATTTGTCTCCCACCGGACTCGCCGGCTTCGTGCTGGCCAATGGCTCCATGTCGTCCAACCAGTCGGG TGAAGGCGAGATCCGCAAAACGATTGTGGAAGCCGATCTCGTGGACTGCATGGTGGCGCTGCCGGGGCAGTTGTTCTACT CCACGCAGATTCCCGTGTGTCTGTGGTTCCTGGCGCGCAACAAACGCAACGGGCGCTTCCGTGATCGGCGCGGGCACGTG CTGTTCATCGATGCGCGCAAGCTCGGCTCAATGGCCGATCGTGTGCGCCGTGAACTGACCGATGCCGACATCGCAAATAT TGCCGACACGTATCACGCTTGGCGTGGTGACAAGGACGCTGGTGAGTACGCGGATGTGGCCGGGTTCTGCAAGAGTGTTT ACATCGACGAGATCCGCCAGCATGGGCATGTGTTGACGCCGGGTCGCTATGTTGGCGCCGAAGACATTGAGGATGATGGG GAGCCGTTTGAGCTGAAGATGCGGCGGCTATCTGCGCAATTGCACGAACAACAGATCGAGTCGGCTGATCTCGACGCTTC AATTCTCGCCAACCTGAAGGAGCTTGGGTATGGGAGGTGA Protein sequence : MARAKKASKSAATSANIGFEAKLWAAADALRNNMDAAEYKHVVLGLIFLKYISDAFEIKHAELASQHADGADPEDPDEYR ADNIFWVPAEARWQFLKANAPQPGVGTMVDDAMAAIERDNPSLKGVLPKDYARPGLDKQRLGQIINLVSDIELGSSADKS KDTLGRVYEYFLSRFASAEGKSGGQFYTPSYVVRVLVEMLAPYKGRVYDPCCGSGGMFVQSEKFIEAHAGKLDDISIYGQ ESNYTTWRLAKMNLAIRGIDAQIGHGDTLHDDKHPDLKADYVLANPPFNDSDWRGELLKDDQRWAYGAPPAGNANFAWVQ HFIHHLSPTGLAGFVLANGSMSSNQSGEGEIRKTIVEADLVDCMVALPGQLFYSTQIPVCLWFLARNKRNGRFRDRRGHV LFIDARKLGSMADRVRRELTDADIANIADTYHAWRGDKDAGEYADVAGFCKSVYIDEIRQHGHVLTPGRYVGAEDIEDDG EPFELKMRRLSAQLHEQQIESADLDASILANLKELGYGR |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdM | BAD24842.1 | HsdM protein | Not tested | Type-V SCCmec | Protein | 1e-155 | 61 |
| hsdM | YP_251979.1 | type I restriction-modification system DNA methylase | Not tested | SCCmec | Protein | 4e-157 | 61 |
| hsdM | BAH57701.1 | type I restriction-modification system DNA methylase | Not tested | Type-VII SCCmec | Protein | 3e-156 | 61 |
| api49 | CAF28523.1 | putative HsdM-like N-methyl transferase | Not tested | YAPI | Protein | 9e-122 | 52 |
