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Name : secD (LHK_02760) Accession : YP_002796750.1 Strain : Laribacter hongkongensis HLHK9 Genome accession: NC_012559 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 2636762 - 2638579 bp Length : 1818 bp Strand : + Note : Protein-export membrane protein secD; part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature prot DNA sequence : ATGAACCGCTATCCGCTTTGGAAGTACCTGATCATTGCACTGGCCCTGATCGTCAGTGCGATCTACACCGTACCGAACTT CTACGGCGAAAGCCCGGCGGTGCAGATTTCCAGCACGCGCAGCGCCTATCCGGTCAACACATCTCTGATGGACCAGGTGG AAACCCTGCTGAAAACCCGCGAGCTTTCCCCCGACGGCATCTACCTTGACGGCGGCAGCCTCAAGGTGCGCTTTCGCAGC CCCGACGAACAGCTCAAGGCCCGCGATGCCATCCAGCAGGCACTGGGCGACCATTACATCGTCGCACTGAACCTGCTCTC CTCGTCCCCGGCCTGGCTCGCCTCGATCAAGGCCCACCCGATGTTCCTCGGCCTTGACCTGCGCGGCGGCGTGCACTTCC TGCTGGAAGTCGACATGAAAGCCGCCGTCGACAAGACGCTGGAACGCTACGCCGGCGACATCCGCCGCGAACTCAAGGCC AAGAAGATCCGCTACGGCCAGATCCGCCGTACCGGCGATTCGCTGGAAATCGGCGCCCGTGACGAAGCCACCCTCAAGGC CATCGAAGACGTCATCGCCCGCCAGCTGCCCAACCTGACCCTGCGCGCCGACGACAACACCGGCCGCCTGATCGCCTCCC TGTCCGAACCGGAAATCCGCAAGGTGCAGGAAGACGCCGTCCGCCAGAACATCACCACCCTGCACAACCGCGTGAACGAA CTGGGCGTGGCCGAACCGGTCATCCAGCAGTCCGGCGCCAACCGCATCGTGGTCCAGCTGCCGGGCGTACAGGACACGGC CAAGGCCAAGGACATCCTCGGCCGCACCGCCACCCTCGAAGTGCGCATGGTCGAAGACGACAGCCAGAAACTGTCCGACG CCATTGCCGGCGTCACGCCGGCCGGCTACGAGCTGATGCAGGAAATGACTTCGCGCGGCCCGCAGCCGATCCTCGTCAAG AAAGAAGTCGAACTGACCGGCGACAACATCAACGATGCCCAGCCGGGCTTCGATGAAAACGGTACGCCGGCCGTACACAT CAATCTTGACTCGACCGGCAGCTCCATCTTCCGCCAAGTCACCGCCGAGAACATCGGTCGCCGCATGGCGATGATCCTCG TCGAAAAGGGCAAGGGTGAAGTGGTCACGGCTCCGGTCATCCGCAGCGAAATCGGCGGTGGCCGCGTGCAGATCTCCGGT TCGATGAACGCCGCCGAAGCCAACGACGTGGCACTGCTGCTGCGCGCCGGCTCGCTGGCTGCTCCGATGAACATCATCGA AGAACGCACGGTTGGCCCGTCGCTCGGTGCCGATAACATCCGCATGGGCTTCAACTCGACGGTGTACGGCTTCCTCGCCA TCGCAGTCTTCATGGTGTTCTATTACCGCGTGTTCGGCACGATTTCGACCCTGTCGCTCGGCGCCAACGTGATGTTCCTG ATTGCACTCCTGTCGATGCTTCAGGCCACGCTGACGCTGCCGGGCATTGCCGCCATCGCGCTGACGCTGGGCATGGCCAT CGACGCCAACGTGCTGATCAACGAACGGGTGCGCGAGGAACTGCGCAACGGCATGCCGCCGCAGGCAGCCATCCGGGCCG GTTACGACCATGCCTGGCACACGATCCTCGACTCCAACATCACCACGCTGATCGCTGGCCTGGCCCTGCTGATTTTCGGC TCGGGTCCGGTGCGCGGCTTTGCCGTGGTGCACTGCCTGGGCATCCTGACGTCGATGTTCTCGGCGGTGATGGTGTCGCG CGGACTGGTCAACCTGGTCTACGGCTCGCGCAGACGGCTGACCACGCTGTCGATCTGA Protein sequence : MNRYPLWKYLIIALALIVSAIYTVPNFYGESPAVQISSTRSAYPVNTSLMDQVETLLKTRELSPDGIYLDGGSLKVRFRS PDEQLKARDAIQQALGDHYIVALNLLSSSPAWLASIKAHPMFLGLDLRGGVHFLLEVDMKAAVDKTLERYAGDIRRELKA KKIRYGQIRRTGDSLEIGARDEATLKAIEDVIARQLPNLTLRADDNTGRLIASLSEPEIRKVQEDAVRQNITTLHNRVNE LGVAEPVIQQSGANRIVVQLPGVQDTAKAKDILGRTATLEVRMVEDDSQKLSDAIAGVTPAGYELMQEMTSRGPQPILVK KEVELTGDNINDAQPGFDENGTPAVHINLDSTGSSIFRQVTAENIGRRMAMILVEKGKGEVVTAPVIRSEIGGGRVQISG SMNAAEANDVALLLRAGSLAAPMNIIEERTVGPSLGADNIRMGFNSTVYGFLAIAVFMVFYYRVFGTISTLSLGANVMFL IALLSMLQATLTLPGIAAIALTLGMAIDANVLINERVREELRNGMPPQAAIRAGYDHAWHTILDSNITTLIAGLALLIFG SGPVRGFAVVHCLGILTSMFSAVMVSRGLVNLVYGSRRRLTTLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 2e-103 | 43 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-103 | 43 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-103 | 43 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-103 | 43 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-103 | 43 |
